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@sateeshperi sateeshperi released this 12 Jun 18:26
· 769 commits to master since this release
2.4.0
81f989c
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Learn about vigilant mode.

Pipeline Updates

  • Updated template to nf-core/tools v2.8
  • Add --bamqc_regions_file parameter for targeted methylation sequencing data #302
  • ✨ Add NF-TEST tests and snapshots for the pipeline test profile #310

Bug fixes & refactoring

  • 🛠️ update index file channels to explicit value channels #310
  • 🐛 fix params.test_data_base in test and test_full configs #310
  • 🤖 GitHub Actions CI - pull_reqest to dev tests with NXF_VER latest-everything #310
  • 🤖 GitHub Actions CI - pull_reqest to master tests with NXF_VER 22.10.1 & latest-everything #310
  • 🤖 GitHub Actions CI - fail-fast set to false #310
  • 🐛 get to the bottom of index tests #278
  • ✨ Support for Bismark methylation extraction ignore and ignore_3prime parameters when ignore_r1 or ignore_3prime_r1 are greater than 0. #322
  • 🛠️ rename ignore -> ignore_r1 and ignore_3prime -> ignore_3prime_r1 params #322
  • 🐛 removed unused directory #297
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