Skip QUANT for empty FDR-filtered samples (#427)#451
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…pty TSV instead of crashing in FeatureLinkerUnlabeledKD (nf-core#427). Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
…full errors when pulling biocontainers
…rs via fdr_filtered_empty emit
…d RunsOn AMI contents
… MultiQC versions YAML is valid
… sam-cli, gradle) after jlumbroso cleanup to free ~2.9 GB more
…block nf-core lint
… ad-hoc rm -rf step
…k_max args (NF 25.04 rejects unquoted multi-colon selectors).
…x forbids withName: inside if {}).
mapo9
approved these changes
May 19, 2026
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Closes #427: skip QUANT for samples whose FDR-filtered idXML is empty and write an empty TSV instead of crashing in
FeatureLinkerUnlabeledKD.PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).