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Bioawk update to move closer to Gawk #19333

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Bioawk update to move closer to Gawk

Bioawk update to move closer to Gawk #19333

Triggered via pull request March 26, 2026 20:05
@DLBPointonDLBPointon
synchronize #11060
bioawk_update
Status Success
Total duration 2m 33s
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lint.yml

on: pull_request
nf-core-changes
11s
nf-core-changes
pre-commit
1m 42s
pre-commit
Matrix: nf-core lint modules
Matrix: nf-core lint subworkflows
confirm-pass-lint
5s
confirm-pass-lint
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5 warnings
pre-commit
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
pre-commit
Input 'extra_args' has been deprecated with message: The extra_args input has been renamed to extra-args. Update your workflow.
pre-commit
Checksum is not known for 0.3.8:prek-x86_64-unknown-linux-gnu.tar.gz; skipping verification for prek 0.3.8
pre-commit
Input 'extra_args' has been deprecated with message: The extra_args input has been renamed to extra-args. Update your workflow.
nf-core lint modules (bioawk)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/