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Pull requests: nf-core/modules

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176 Open 8,430 Closed
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Pull requests list

Add amplicon input channels to CRISPRESSO2 + minor tweaks
#11780 opened May 27, 2026 by itrujnara Contributor Loading…
10 of 12 tasks
Add regenie/runl1 module
#11768 opened May 26, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
Add regenie/runl0 module
#11767 opened May 26, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
feat: support task.ext.args in sentieon/gvcftyper size/xs
#11763 opened May 26, 2026 by nicorap Contributor Loading…
11 of 14 tasks
2
Upgrade environment schema to support additional scenarios
#11758 opened May 25, 2026 by toniher Member Loading…
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
feat(custom): orfnormalise + orfmerge modules + orftable_fasta_gtf_buildorfcatalogue subworkflow
#11740 opened May 21, 2026 by pinin4fjords Member Loading…
5 tasks done
1
Add regenie/splitl0 module
#11739 opened May 21, 2026 by lyh970817 Contributor • Draft
13 of 14 tasks
feat(vcontact3): add vcontact3/prepareddatabases module
#11738 opened May 21, 2026 by olawal1001 • Draft
17 tasks
13
Add new module: savana/run Ready for Review
#11737 opened May 21, 2026 by manascripts Member Loading…
10 of 13 tasks
6
new module: custom/bed12codonpositions Ready for Review
#11733 opened May 21, 2026 by pinin4fjords Member Loading…
4 tasks done
1
Update phasing and imputation sbwf
#11731 opened May 21, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
feat(simpleaf): add simpleaf/multiplexquant module
#11724 opened May 20, 2026 by an-altosian Contributor Loading…
3 tasks
3
Add new module: octopusv/stat Ready for Review
#11719 opened May 20, 2026 by manascripts Member Loading…
11 of 13 tasks
9
add anvi-gen-contigs-database module Ready for Review
#11713 opened May 20, 2026 by telatin Contributor Loading…
12 of 17 tasks
1
Add samplesheetparser/diff module
#11711 opened May 20, 2026 by chaitanyakasaraneni Contributor Loading…
11 of 14 tasks
Mobsuite typer
#11664 opened May 17, 2026 by jfy133 Member Loading…
17 tasks
1
New module: GRIMER
#11663 opened May 17, 2026 by Jonahnki Loading…
5 tasks done
1
27
Add new module: flumut size/m
#11662 opened May 17, 2026 by EdoardoGiussani Loading…
9 of 11 tasks
1
2
Test: Phold
#11661 opened May 17, 2026 by anna-parker • Draft
17 tasks
3
Update parabricks mutectcaller for sarek
#11647 opened May 14, 2026 by gburnett-nvidia Contributor Loading…
Allow cellranger renaming to ignore irregular filename patterns enhancement New feature or request
#11646 opened May 14, 2026 by tgelafr-pfzr Contributor Loading…
5 of 7 tasks
1
@tgelafr-pfzr
10
Add custom clustering
#11642 opened May 13, 2026 by dbaku42 Contributor Loading…
3 tasks done
new module DeepMAsED
#11629 opened May 12, 2026 by SkyLexS Contributor Loading…
13 of 17 tasks
@SkyLexS
Support matrix.mtx.gz cellbender remove-background input
#11565 opened May 7, 2026 by alecw Loading…
4 of 13 tasks
3
ProTip! Exclude everything labeled bug with -label:bug.