fix(orftable_fasta_gtf_buildorfcatalogue): align AA FASTA name across collapse toggle [skip ci]

pinin4fjords · claude · pinin4fjords · commit 88adfa21a807 · 2026-06-16T12:58:50.000+01:00
Drop the .aa infix from the seqkit/translate prefix so the emitted
catalogue_aa_fasta is cohort.catalogue.fasta whether or not the collapse
pass runs.

Co-Authored-By: Claude Opus 4.8 (1M context) &lt;noreply@anthropic.com&gt;
diff --git a/subworkflows/nf-core/orftable_fasta_gtf_buildorfcatalogue/nextflow.config b/subworkflows/nf-core/orftable_fasta_gtf_buildorfcatalogue/nextflow.config
@@ -4,7 +4,7 @@ process {
         ext.args   = '-split -s -nameOnly'
     }
     withName: 'ORFTABLE_FASTA_GTF_BUILDORFCATALOGUE:SEQKIT_TRANSLATE' {
-        ext.prefix = { "${meta.id}.catalogue.aa" }
+        ext.prefix = { "${meta.id}.catalogue" }
         ext.args   = '--trim'
     }
     withName: 'ORFTABLE_FASTA_GTF_BUILDORFCATALOGUE:MMSEQS_EASYCLUSTER' {

Original file line number	Diff line number	Diff line change
`@@ -4,7 +4,7 @@ process {`
`4`	`4`	`ext.args = '-split -s -nameOnly'`
`5`	`5`	`}`
`6`	`6`	`withName: 'ORFTABLE_FASTA_GTF_BUILDORFCATALOGUE:SEQKIT_TRANSLATE' {`
`7`		`- ext.prefix = { "${meta.id}.catalogue.aa" }`
	`7`	`+ ext.prefix = { "${meta.id}.catalogue" }`
`8`	`8`	`ext.args = '--trim'`
`9`	`9`	`}`
`10`	`10`	`withName: 'ORFTABLE_FASTA_GTF_BUILDORFCATALOGUE:MMSEQS_EASYCLUSTER' {`