Adopt topic channels in all nf-core modules [PART 4] #10832
Description
Parent issue and instructions here: #9978
- Migration to topic channels: eagle2
- Migration to topic channels: ectyper
- Migration to topic channels: eigenstratdatabasetools/eigenstratsnpcoverage
- Migration to topic channels: eklipse
- Migration to topic channels: emmtyper
- Migration to topic channels: endorspy
- Migration to topic channels: epang/place
- Migration to topic channels: epang/split
- Migration to topic channels: estsfs
- Migration to topic channels: evigene/tr2aacds
- Migration to topic channels: expansionhunterdenovo/merge
- Migration to topic channels: expansionhunterdenovo/profile
- Migration to topic channels: falint
- Migration to topic channels: famsa/guidetree
- Migration to topic channels: faqcs
- Migration to topic channels: fargene
- Migration to topic channels: fast2q
- Migration to topic channels: fastavalidator
- Migration to topic channels: fastcov
- Migration to topic channels: fastme
- Migration to topic channels: fastqe
- Migration to topic channels: fastqscan #10889
- Migration to topic channels: fasttree
- Migration to topic channels: fastx/collapser
- Migration to topic channels: fcs/fcsadaptor
- Migration to topic channels: fcs/fcsgx
- Migration to topic channels: fcsgx/cleangenome
- Migration to topic channels: fcsgx/fetchdb
- Migration to topic channels: fcsgx/rungx
- Migration to topic channels: ffq
- Migration to topic channels: fibertoolsrs/addnucleosomes
- Migration to topic channels: fibertoolsrs/extract
- Migration to topic channels: fibertoolsrs/predictm6a
- Migration to topic channels: find/concatenate
- Migration to topic channels: find/unpigz
- Migration to topic channels: flash
- Migration to topic channels: foldcomp/compress
- Migration to topic channels: foldcomp/decompress
- Migration to topic channels: foldmason/createdb
- Migration to topic channels: foldmason/msa2lddtreport
- Migration to topic channels: foldseek/createdb
- Migration to topic channels: foldseek/easysearch
- Migration to topic channels: fq/generate
- Migration to topic channels: fusioncatcher/build
- Migration to topic channels: fusioncatcher/fusioncatcher
- Migration to topic channels: fusioninspector
- Migration to topic channels: fusionreport/detect
- Migration to topic channels: fusionreport/download
- Migration to topic channels: gamma/gamma
- Migration to topic channels: gangstr
- Migration to topic channels: gappa/examineassign
- Migration to topic channels: gappa/examinegraft
- Migration to topic channels: gappa/examineheattree
- Migration to topic channels: gecco/convert
- Migration to topic channels: gecco/run
- Migration to topic channels: gem2/gem2bedmappability
- Migration to topic channels: gem2/gemindexer
- Migration to topic channels: gem2/gemmappability
- Migration to topic channels: gem3/gem3indexer
- Migration to topic channels: gem3/gem3mapper
- Migration to topic channels: genescopefk
- Migration to topic channels: genmap/index
- Migration to topic channels: genmap/map
- Migration to topic channels: genomad/download
- Migration to topic channels: genomad/endtoend
- Migration to topic channels: genotyphi/parse
- Migration to topic channels: genrich
- Migration to topic channels: geofetch
- Migration to topic channels: geoquery/getgeo
- Migration to topic channels: getorganelle/config
- Migration to topic channels: getorganelle/fromreads
- Migration to topic channels: gfaffix
- Migration to topic channels: gmmdemux