fix: add meta to tests

Author: atrigila

subworkflows/local/normalize/tests/main.nf.test

@@ -8,15 +8,22 @@ nextflow_workflow {
         when {
             workflow {
                 """
-                input[0] = Channel.of(
+                // Input 0: counts channel with meta and RCC files
+                input[0] = Channel.of([
+                    [ id: 'test_sample' ], // meta map
                     [
-                        file(params.pipelines_testdata_base_path + 'nanostring/RCC_files/salmon_01_01.RCC', checkIfExists: true),
-                        file(params.pipelines_testdata_base_path + 'nanostring/RCC_files/salmon_02_02.RCC', checkIfExists: true),
-                        file(params.pipelines_testdata_base_path + 'nanostring/RCC_files/salmon_03_03.RCC', checkIfExists: true),
-                        file(params.pipelines_testdata_base_path + 'nanostring/RCC_files/salmon_04_04.RCC', checkIfExists: true)
+                        file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/RCC_files/salmon_01_01.RCC', checkIfExists: true),
+                        file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/RCC_files/salmon_02_02.RCC', checkIfExists: true),
+                        file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/RCC_files/salmon_03_03.RCC', checkIfExists: true),
+                        file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/RCC_files/salmon_04_04.RCC', checkIfExists: true)
                     ]
-                )
-                input[1] = file(params.pipelines_testdata_base_path + 'nanostring/samplesheets/samplesheet_test.csv', checkIfExists: true)
+                ])
+
+                // Input 1: samplesheet channel with meta and file
+                input[1] = Channel.of([
+                    [ id: 'test_samplesheet' ], // meta map
+                    file('https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/nanostring/samplesheets/samplesheet_test.csv', checkIfExists: true)
+                ])
                 """
             }
         }

subworkflows/local/normalize/tests/main.nf.test.snap

@@ -3,29 +3,49 @@
         "content": [
             {
                 "0": [
-                    "normalized_counts.tsv:md5,a0124c7a24bd04296f441d9ade82a05f"
+                    [
+                        {
+                            "id": "test_sample"
+                        },
+                        "normalized_counts.tsv:md5,a0124c7a24bd04296f441d9ade82a05f"
+                    ]
                 ],
                 "1": [
-                    "normalized_counts_wo_HKnorm.tsv:md5,5a2ce112c24e1b0d0f4cf3392111ef9e"
+                    [
+                        {
+                            "id": "test_sample"
+                        },
+                        "normalized_counts_wo_HKnorm.tsv:md5,5a2ce112c24e1b0d0f4cf3392111ef9e"
+                    ]
                 ],
                 "2": [
-                    "versions.yml:md5,eacb31511724a946730536d6bb82ae6d"
+                    "versions.yml:md5,8d505473166a2c4bac1c65a5475ae481"
                 ],
                 "normalized_counts": [
-                    "normalized_counts.tsv:md5,a0124c7a24bd04296f441d9ade82a05f"
+                    [
+                        {
+                            "id": "test_sample"
+                        },
+                        "normalized_counts.tsv:md5,a0124c7a24bd04296f441d9ade82a05f"
+                    ]
                 ],
                 "normalized_counts_wo_HK": [
-                    "normalized_counts_wo_HKnorm.tsv:md5,5a2ce112c24e1b0d0f4cf3392111ef9e"
+                    [
+                        {
+                            "id": "test_sample"
+                        },
+                        "normalized_counts_wo_HKnorm.tsv:md5,5a2ce112c24e1b0d0f4cf3392111ef9e"
+                    ]
                 ],
                 "versions": [
-                    "versions.yml:md5,eacb31511724a946730536d6bb82ae6d"
+                    "versions.yml:md5,8d505473166a2c4bac1c65a5475ae481"
                 ]
             }
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "24.10.1"
+            "nf-test": "0.9.2",
+            "nextflow": "25.04.6"
         },
-        "timestamp": "2024-11-19T12:03:04.242579414"
+        "timestamp": "2025-08-27T16:47:34.392689745"
     }
 }