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- #177 · scwatts opened
on Apr 5, 2025
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Stub behaviour of
LINX_SOMATICdoes not reproduce the output file structurebugSomething isn't workingSomething isn't workingStatus: Open.Pipeline stub test doesn't snapshot file content
enhancementNew feature or requestNew feature or requestStatus: Open.#298 In nf-core/oncoanalyser;There are no tests for local modules
enhancementNew feature or requestNew feature or requestStatus: Open.#297 In nf-core/oncoanalyser;Publish fastp reports and log files
enhancementNew feature or requestNew feature or requestStatus: Open.Workflow fails intermittently due to UnknownHostException from s3://ngi-igenomes/igenomes/
bugSomething isn't workingSomething isn't workingStatus: Open.#288 In nf-core/oncoanalyser;Add support for realigning from bam/cram input
enhancementNew feature or requestNew feature or requestStatus: Open.#287 In nf-core/oncoanalyser;Duelling resource requirements of esvee and bwa_mem
enhancementNew feature or requestNew feature or requestStatus: Open.#283 In nf-core/oncoanalyser;Please document gnomad and clinvar annotation versions
enhancementNew feature or requestNew feature or requestStatus: Open.#282 In nf-core/oncoanalyser;Add support for RNA CRAM input
enhancementNew feature or requestNew feature or requestStatus: Open.#279 In nf-core/oncoanalyser;Improve handling of metadata and multiple samples
enhancementNew feature or requestNew feature or requestStatus: Open.#275 In nf-core/oncoanalyser;Patient with 2 donors
enhancementNew feature or requestNew feature or requestStatus: Open.#274 In nf-core/oncoanalyser;Support for multiple tumor samples per patient (longitudinal and multi-region) in a single run
enhancementNew feature or requestNew feature or requestStatus: Open.#249 In nf-core/oncoanalyser;