Merge branch 'milestone_2.2.0' of github.com:nf-core/pairgenomealign into milestone_2.2.0

Author: charles-plessy

subworkflows/local/fasta_bgzip_index_dict_samtools/tests/main.nf.test

@@ -12,7 +12,6 @@ nextflow_workflow {
     tag "samtools/dict"
     tag "samtools/faidx"
 
-
     test("sarscov2 - fasta") {
 
         when {

workflows/pairgenomealign.nf

@@ -90,7 +90,7 @@ workflow PAIRGENOMEALIGN {
     ch_targetgenome_gzi = [[],[]]
     ch_targetgenome_dic = [[],[]]
 
-    if (params.export_aln_to.contains('cram') |params.export_aln_to.contains('bam')) {
+    if (params.export_aln_to.contains('cram') | params.export_aln_to.contains('bam')) {
         FASTA_BGZIP_INDEX_DICT_SAMTOOLS( ch_targetgenome )
         ch_targetgenome_faz = FASTA_BGZIP_INDEX_DICT_SAMTOOLS.out.fasta_gz
         ch_targetgenome_fai = FASTA_BGZIP_INDEX_DICT_SAMTOOLS.out.fai