Adding beagle 5.2 to phaseimpute#203

Closed

gichas wants to merge 155 commits intonf-core:masterfrom

Commits on Oct 8, 2024

Template update for nf-core/tools version 3.0.0
nf-core-bot
committed

Commits on Oct 9, 2024

Template update for nf-core/tools version 3.0.1
nf-core-bot
committed

Commits on Oct 11, 2024

Template update for nf-core/tools version 3.0.2
nf-core-bot
committed

Commits on Dec 9, 2024

Commits on Dec 12, 2024

Template update for nf-core/tools version 3.1.0
nf-core-bot
committed

Commits on Dec 19, 2024

Commits on Dec 20, 2024

Template update for nf-core/tools version 3.1.1
nf-core-bot
committed

Commits on Jan 16, 2025

Merge branch 'TEMPLATE' into merging-template-updates
LouisLeNezet
committed
Update changelog
LouisLeNezet
committed

Commits on Jan 20, 2025

Commits on Jan 21, 2025

Update README.md

LouisLeNezet
and
fbdtemme
authored
Update nextflow.config

LouisLeNezet
and
fbdtemme
authored

Commits on Jan 22, 2025

Commits on Jan 27, 2025

Commits on Jan 29, 2025

Merge branch 'TEMPLATE' into template_3.2.0
LouisLeNezet
committed
Update changelog and add support for json / yaml
LouisLeNezet
committed
Move function of CHRCHECK
LouisLeNezet
committed
Fix typo
LouisLeNezet
committed
Merge pull request #175 from LouisLeNezet/template_3.2.0
LouisLeNezet
authored

Commits on Feb 6, 2025

Commits on Feb 7, 2025

Merge pull request #179 from atrigila/dev
LouisLeNezet
authored

Commits on Feb 24, 2025

Commits on Feb 25, 2025

Commits on Feb 26, 2025

Update changelog
LouisLeNezet
committed

Commits on Apr 30, 2025

Template update for nf-core/tools version 3.2.1
nf-core-bot
committed

Commits on Jun 3, 2025

Template update for nf-core/tools version 3.3.1
nf-core-bot
committed

Commits on Jun 18, 2025

Merge branch 'TEMPLATE' into merging-template-updates
LouisLeNezet
committed
REmove extra new lines
LouisLeNezet
committed
Set to . for nf-test dir
LouisLeNezet
committed
Fix rocrate
LouisLeNezet
committed
Fix meta usage
LouisLeNezet
committed
Fix vcf_concordance_glimpse2
LouisLeNezet
committed
Update old snapshot
LouisLeNezet
committed
Update nf-test
LouisLeNezet
committed
Fix test
LouisLeNezet
committed
Fix comment
LouisLeNezet
committed
Fix test
LouisLeNezet
committed
Update snapshot
LouisLeNezet
committed
Update snapshot
LouisLeNezet
committed
Remove default test profile
LouisLeNezet
committed
Fix sorting output
LouisLeNezet
committed
Simplify config
LouisLeNezet
committed
Fix path
LouisLeNezet
committed
Update test
LouisLeNezet
committed
Fix sorting txt file
LouisLeNezet
committed
Update versions
LouisLeNezet
committed
Fix test bcftools concat
LouisLeNezet
committed
Move test profile test to default.nf.test
LouisLeNezet
committed
Fix default test
LouisLeNezet
committed

Commits on Jun 19, 2025

Update CHANGELOG
LouisLeNezet
committed
Merge pull request #197 from LouisLeNezet/merging-template-updates
LouisLeNezet
authored
Remove non used modules

LouisLeNezet
authored and
LouisLeNezet
committed
Recompile rocrate

LouisLeNezet
authored and
LouisLeNezet
committed
Add subworkflow meta.yml

LouisLeNezet
authored and
LouisLeNezet
committed
Update documentation

LouisLeNezet
authored and
LouisLeNezet
committed
Update changelog

LouisLeNezet
authored and
LouisLeNezet
committed
Fix config

LouisLeNezet
authored and
LouisLeNezet
committed
Rename add columns
LouisLeNezet
committed
Rename list to files
LouisLeNezet
committed
Rename bam/vcf chr extract
LouisLeNezet
committed
Update nextflow XPath test
LouisLeNezet
committed
Set get region as a function
LouisLeNezet
committed
Set chunk prepare channel as function
LouisLeNezet
committed
Fix included components
LouisLeNezet
committed
Update subworkflows/local/bam_extract_region_samtools/meta.yml

LouisLeNezet
and
jfy133
authored
Set to type: file
LouisLeNezet
committed
Update to {,}
LouisLeNezet
committed
Use pipelines_tesdata_base_path
LouisLeNezet
committed
Remove left file
LouisLeNezet
committed
Update versions
LouisLeNezet
committed
Fix getRegionFromFai test
LouisLeNezet
committed
Update params
LouisLeNezet
committed
Update versions
LouisLeNezet
committed
Update nf-test
LouisLeNezet
committed
Merge pull request #188 from LouisLeNezet/lint
LouisLeNezet
authored