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Add MINIMAC4 imputation tool#211

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LouisLeNezet merged 14 commits intonf-core:devfrom
LouisLeNezet:minimac4
Nov 14, 2025
Merged

Add MINIMAC4 imputation tool#211
LouisLeNezet merged 14 commits intonf-core:devfrom
LouisLeNezet:minimac4

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PR checklist

Close #204

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/phaseimpute branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@LouisLeNezet LouisLeNezet self-assigned this Nov 10, 2025
@LouisLeNezet LouisLeNezet added the enhancement New feature or request label Nov 10, 2025
@LouisLeNezet LouisLeNezet linked an issue Nov 10, 2025 that may be closed by this pull request
@LouisLeNezet LouisLeNezet mentioned this pull request Nov 10, 2025
11 tasks
Co-authored-by: Anabella Trigila <18577080+atrigila@users.noreply.github.com>
@LouisLeNezet LouisLeNezet merged commit 66549d5 into nf-core:dev Nov 14, 2025
22 checks passed
@LouisLeNezet LouisLeNezet deleted the minimac4 branch March 1, 2026 18:10
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Impute vcf files / snp chip array

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