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@LouisLeNezet LouisLeNezet commented Dec 19, 2025

PR checklist

Replace #221
Change to nf-core sbwf for GLIMPSE1
Small change to vcf_index instead of vcf_tbi for consistency.

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/phaseimpute branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@LouisLeNezet LouisLeNezet changed the base branch from master to dev December 19, 2025 16:19
@LouisLeNezet LouisLeNezet self-assigned this Dec 22, 2025
@LouisLeNezet LouisLeNezet added the enhancement New feature or request label Dec 22, 2025
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