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Bump version to 3.1.0dev
Merge changes from patch 3.0.1 back into dev
As far as I understand, this was set so that Nextflow would re-run in case the samplesheet changes. Nextflow does this natively though
Make nf-core/pixelator compliant with strict syntax
Co-authored-by: Johan Dahlberg <johan@uppsala-bioinformatics.se>
Use $TMPDIR to set temporaryr directories
Enable retry for experiment summary
…0.8.6 Update pixelatorES to 0.8.6
The test profile is defined in the nf-test.config
Fix review comments 4.0.0
johandahlberg
approved these changes
May 22, 2026
Remove leftover test config
vagkaratzas
approved these changes
May 22, 2026
vagkaratzas
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Thanks for the updates! Whatever was left, note down for the next release ;)
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[4.0.0] - 2026-05-19
Added
Enhancements & fixes
TMPDIRwhen defined to store temporary files by @Aratz #195cells_1kandcells_8kNextflow profiles with process-specific resource overrides for different input scales by @johandahlberg #203Software dependencies
pixelatorESpixelatorWarning
Panel and design names have been completely renamed in pixelator 0.26 (nf-core/pixelator 4.0 and above). Refer to the pixelator changelog for more details.
Parameters
--leiden-iterations--min-component-size-in-refinement--min-component-size-to-prune--edge_cycle-verificationNote
Parameter has been updated if both old and new parameter information is present.
Parameter has been added if just the new parameter information is present.
Parameter has been removed if new parameter information isn't present.