Improve usage documentation#216
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johandahlberg
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This is great. Makes it much more readable.
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This PR fixes dead links and reworks the documentation: put pipeline quick start / run instruction at the top, add a section specifying required parameters.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).