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Replace ch_publish with named typed emits for call_snv, call_snv_deepvariant, and postprocess_MT_calls #3002

Replace ch_publish with named typed emits for call_snv, call_snv_deepvariant, and postprocess_MT_calls

Replace ch_publish with named typed emits for call_snv, call_snv_deepvariant, and postprocess_MT_calls #3002

Triggered via pull request May 29, 2026 22:23
Status Success
Total duration 4m 45s
Artifacts 1

linting.yml

on: pull_request
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nf-core
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: pietrobolcato/action-read-yaml@9f13718d61111b69f30ab4ac683e67a56d254e1d. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
nf-core
No file matched to [/home/runner/work/raredisease/raredisease/**/*requirements*.txt,/home/runner/work/raredisease/raredisease/**/*requirements*.in,/home/runner/work/raredisease/raredisease/**/*constraints*.txt,/home/runner/work/raredisease/raredisease/**/*constraints*.in,/home/runner/work/raredisease/raredisease/**/pyproject.toml,/home/runner/work/raredisease/raredisease/**/uv.lock,/home/runner/work/raredisease/raredisease/**/*.py.lock]. The cache will never get invalidated. Make sure you have checked out the target repository and configured the cache-dependency-glob input correctly.

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linting-logs
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sha256:55d2e8d98d04b9a7dbb800382e9caeb6b9b82f7774f7a2a91a1506c1ca1e3c8d