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Pull requests: nf-core/raredisease

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Pull requests list

Release 3.1.1 (Patch deepvariant/rundeepvariant to detect silent failures)
#889 opened Jun 22, 2026 by ramprasadn Collaborator Loading…
12 tasks
5
Sync dev with master
#886 opened Jun 17, 2026 by ramprasadn Collaborator • Draft
12 tasks
1
Add somalier subworkflow
#878 opened Jun 11, 2026 by peterpru Member Loading…
12 tasks
1
@peterpru
6
Add FastDup from nf-core modules to raredisease (subworkflow align_bwa_bwamem2_bwameme)
#876 opened Jun 10, 2026 by emmadizdarevic Contributor Loading…
3 of 12 tasks
2
Update saltshaker reports
#856 opened May 25, 2026 by ieduba Contributor Loading…
12 tasks
@ieduba
24
Update docs/CONTRIBUTING.md on forked repos, CI/CD
#851 opened May 20, 2026 by torbjorgen Loading…
@torbjorgen
1
[dup] Add support for variant scoring by MIVMIR, GICAM models
#849 opened May 19, 2026 by torbjorgen Loading…
2
Feat/add optional filter params
#828 opened Apr 30, 2026 by krbe9202 Loading…
8 of 12 tasks
1
Add support for variant scoring by MIVMIR, GICAM models
#812 opened Apr 16, 2026 by torbjorgen Loading…
18 tasks done
1
@torbjorgen
64
Add annotate_cadd subworkflow test
#794 opened Mar 24, 2026 by peterpru Member • Draft
12 tasks
@peterpru
2
Add GATK contamination check to complement VerifyBamID2
#758 opened Dec 15, 2025 by dorotejavujinovic Loading…
5 of 8 tasks
9
Add Parabricks DeepVariant module
#724 opened Sep 19, 2025 by HudoGriz Loading…
3 of 12 tasks
3
Deepvariant subworkflow (issue #614)
#651 opened Dec 6, 2024 by fa2k Contributor • Draft
7 tasks done
9
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