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Merged
nvnieuwk merged 3 commits into from
Feb 9, 2026
Merged

Bump to 4.1.0 #788

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c5cb928
bump to 4.1.0
nvnieuwk Feb 9, 2026
ff31261
update snaps
nvnieuwk Feb 9, 2026
5fd8c87
add zenodo doi
nvnieuwk Feb 9, 2026
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2 changes: 1 addition & 1 deletion .nf-core.yml
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Expand Up @@ -16,4 +16,4 @@ template:
name: rnafusion
org: nf-core
outdir: .
version: 4.1.0dev
version: 4.1.0
2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v4.1.0dev
## v4.1.0 - [2026-02-09]

### Added

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2 changes: 1 addition & 1 deletion assets/multiqc_config.yml
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@@ -1,5 +1,5 @@
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/rnafusion/tree/dev" target="_blank">nf-core/rnafusion</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/rnafusion/dev/docs/output" target="_blank">documentation</a>.
This report has been generated by the <a href="https://github.com/nf-core/rnafusion/releases/tag/4.1.0" target="_blank">nf-core/rnafusion</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/rnafusion/4.1.0/docs/output" target="_blank">documentation</a>.

report_section_order:
nf-core-rnafusion-methods-description:
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4 changes: 2 additions & 2 deletions nextflow.config
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Expand Up @@ -356,8 +356,8 @@ manifest {
mainScript = 'main.nf'
defaultBranch = 'master'
nextflowVersion = '!>=24.10.5'
version = '4.1.0dev'
doi = ''
version = '4.1.0'
doi = '10.5281/zenodo.17641566'
}

// Nextflow plugins
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64 changes: 32 additions & 32 deletions ro-crate-metadata.json
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2 changes: 1 addition & 1 deletion tests/test_build.nf.test.snap
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Expand Up @@ -47,7 +47,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
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22 changes: 11 additions & 11 deletions tests/test_stub.nf.test.snap
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Expand Up @@ -71,7 +71,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -308,7 +308,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -469,7 +469,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -643,7 +643,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -874,7 +874,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1006,7 +1006,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1270,7 +1270,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1493,7 +1493,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1570,7 +1570,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1645,7 +1645,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1808,7 +1808,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
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22 changes: 11 additions & 11 deletions tests/test_stub_bam.nf.test.snap
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Expand Up @@ -51,7 +51,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -243,7 +243,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -362,7 +362,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -491,7 +491,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -710,7 +710,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -831,7 +831,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1053,7 +1053,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1261,7 +1261,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1357,7 +1357,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1503,7 +1503,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
Expand Down Expand Up @@ -1836,7 +1836,7 @@
"ucsc": 447
},
"Workflow": {
"nf-core/rnafusion": "v4.1.0dev"
"nf-core/rnafusion": "v4.1.0"
}
},
[
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