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Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam) #658

Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam)

Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam) #658

Triggered via pull request January 30, 2026 14:29
Status Cancelled
Total duration 2h 32m 50s
Artifacts

nf-test.yml

on: pull_request
nf-test-changes
19s
nf-test-changes
Matrix: nf-test
confirm-pass
5s
confirm-pass
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66 errors and 13 warnings
docker | latest-everything | 14/14
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Canceling since a higher priority waiting request for Run nf-test-1685 exists
docker | 25.04.0 | 4/14
The operation was canceled.
confirm-pass
Process completed with exit code 1.
Run nf-test
Canceling since a higher priority waiting request for Run nf-test-1685 exists
docker | latest-everything | 14/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 8/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 9/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 3/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 10/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 7/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 1/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 6/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 12/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 5/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 2/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 13/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 4/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.