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Pull requests: nf-core/rnaseq

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Pull requests list

Fix iGenomes STAR version detection and index building logic
#1756 opened Apr 4, 2026 by pinin4fjords Loading…
4 tasks
3
Add stringtie_merge for de novo assembly
#1755 opened Apr 3, 2026 by Odulhin Loading…
@Odulhin
1
Add RustQC as optional single-pass QC replacement
#1754 opened Apr 2, 2026 by pinin4fjords • Draft
4 tasks
2
fix: remove STAR from RSEM conda environments for ARM compatibility
#1752 opened Apr 2, 2026 by pinin4fjords Loading…
2 tasks
2
docs: Refactor usage docs into user-centric multi-page structure
#1742 opened Mar 4, 2026 by adamrtalbot • Draft
1
2
demo: Record types for workflow outputs
#1703 opened Feb 13, 2026 by pinin4fjords • Draft
3 tasks
3
chore: Update nf-schema to 2.6.1 for strict syntax compatibility
#1680 opened Jan 23, 2026 by pinin4fjords Loading…
1 of 2 tasks
2
feat: Implement Nextflow workflow outputs syntax (breaking change)
#1679 opened Jan 21, 2026 by pinin4fjords • Draft
3 tasks
3
Qc optimization
#1601 opened Aug 22, 2025 by edmundmiller Loading…
11 tasks
@edmundmiller
4
Correct typos in rnaseq DE analysis docs
#1569 opened Jun 10, 2025 by johnvusich Loading…
2 tasks done
1
ARM Megatests
#1529 opened Mar 26, 2025 by edmundmiller Loading…
@edmundmiller
12
Container configs
#1515 opened Mar 17, 2025 by edmundmiller Loading…
@edmundmiller
15
Try matthias' fix to download
#1439 opened Oct 23, 2024 by pinin4fjords • Draft
11 tasks
2
allow integer sample names
#1421 opened Oct 18, 2024 by idot Loading…
1 task
8
Update nextflow_schema.json
#1397 opened Oct 2, 2024 by rraadd88 Loading…
1 of 11 tasks
2
Copy optimized resources from Tower
#1209 opened Feb 6, 2024 by edmundmiller • Draft
@edmundmiller
4
Add NGSCheckMate Ready for review
#993 opened Mar 31, 2023 by SPPearce Loading…
6 of 9 tasks
9
ProTip! Updated in the last three days: updated:>2026-04-02.