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Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam) #667

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Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam)

Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam) #667

Triggered via pull request February 2, 2026 19:56
@gburnett-nvidiagburnett-nvidia
synchronize #1685
gburnett-nvidia:add_parabricks_star
Status Failure
Total duration 23m 36s
Artifacts –

nf-test.yml

on: pull_request
nf-test-changes
17s
nf-test-changes
Matrix: nf-test
confirm-pass
6s
confirm-pass
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51 errors and 10 warnings
docker | latest-everything | 5/14
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confirm-pass
Process completed with exit code 1.
docker | latest-everything | 5/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 13/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 14/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 11/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 6/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 1/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 3/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 7/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 4/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 9/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.