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Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam) #278

Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam)

Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam) #278

Triggered via pull request February 2, 2026 21:19
Status Failure
Total duration 28m 5s
Artifacts

nf-test-arm.yml

on: pull_request
nf-test-changes-arm
17s
nf-test-changes-arm
Matrix: nf-test-arm
confirm-pass-arm
5s
confirm-pass-arm
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31 errors and 6 warnings
docker-arm64 | 25.04.0 | 5/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 5/14
Test with 25.04.0 failed
docker-arm64 | 25.04.0 | 5/14
Process completed with exit code 1.
docker-arm64 | latest-everything | 5/14
Test with latest-everything failed
docker-arm64 | latest-everything | 5/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 14/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 14/14
Test with 25.04.0 failed
docker-arm64 | 25.04.0 | 14/14
Process completed with exit code 1.
docker-arm64 | latest-everything | 14/14
Test with latest-everything failed
docker-arm64 | latest-everything | 14/14
Process completed with exit code 1.
docker-arm64 | latest-everything | 6/14
Test with latest-everything failed
docker-arm64 | latest-everything | 6/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 6/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 6/14
Test with 25.04.0 failed
docker-arm64 | 25.04.0 | 6/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 8/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 8/14
Test with 25.04.0 failed
docker-arm64 | 25.04.0 | 8/14
Process completed with exit code 1.
docker-arm64 | latest-everything | 8/14
Test with latest-everything failed
docker-arm64 | latest-everything | 8/14
Process completed with exit code 1.
docker-arm64 | latest-everything | 7/14
Test with latest-everything failed
docker-arm64 | latest-everything | 7/14
Process completed with exit code 1.
docker-arm64 | latest-everything | 9/14
Test with latest-everything failed
docker-arm64 | latest-everything | 9/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 7/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 7/14
Test with 25.04.0 failed
docker-arm64 | 25.04.0 | 7/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 9/14
Process completed with exit code 1.
docker-arm64 | 25.04.0 | 9/14
Test with 25.04.0 failed
docker-arm64 | 25.04.0 | 9/14
Process completed with exit code 1.
confirm-pass-arm
Process completed with exit code 1.
docker-arm64 | latest-everything | 5/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker-arm64 | latest-everything | 14/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker-arm64 | latest-everything | 6/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker-arm64 | latest-everything | 8/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker-arm64 | latest-everything | 7/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker-arm64 | latest-everything | 9/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.