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Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam) #668

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Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam)

Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam) #668

Triggered via pull request February 2, 2026 21:19
@gburnett-nvidiagburnett-nvidia
synchronize #1685
gburnett-nvidia:add_parabricks_star
Status Failure
Total duration 22m 44s
Artifacts –

nf-test.yml

on: pull_request
nf-test-changes
19s
nf-test-changes
Matrix: nf-test
confirm-pass
5s
confirm-pass
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26 errors and 5 warnings
docker | 25.04.0 | 5/14
Process completed with exit code 1.
docker | 25.04.0 | 5/14
Test with 25.04.0 failed
docker | 25.04.0 | 5/14
Process completed with exit code 1.
docker | 25.04.0 | 14/14
Process completed with exit code 1.
docker | 25.04.0 | 14/14
Test with 25.04.0 failed
docker | 25.04.0 | 14/14
Process completed with exit code 1.
docker | latest-everything | 5/14
Test with latest-everything failed
docker | latest-everything | 5/14
Process completed with exit code 1.
docker | latest-everything | 14/14
Test with latest-everything failed
docker | latest-everything | 14/14
Process completed with exit code 1.
docker | 25.04.0 | 6/14
Process completed with exit code 1.
docker | 25.04.0 | 6/14
Test with 25.04.0 failed
docker | 25.04.0 | 6/14
Process completed with exit code 1.
docker | latest-everything | 6/14
Test with latest-everything failed
docker | latest-everything | 6/14
Process completed with exit code 1.
docker | latest-everything | 7/14
Test with latest-everything failed
docker | latest-everything | 7/14
Process completed with exit code 1.
docker | 25.04.0 | 7/14
Process completed with exit code 1.
docker | 25.04.0 | 7/14
Test with 25.04.0 failed
docker | 25.04.0 | 7/14
Process completed with exit code 1.
docker | 25.04.0 | 9/14
Process completed with exit code 1.
docker | 25.04.0 | 9/14
Test with 25.04.0 failed
docker | 25.04.0 | 9/14
Process completed with exit code 1.
docker | latest-everything | 9/14
Test with latest-everything failed
docker | latest-everything | 9/14
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
docker | latest-everything | 5/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 14/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 6/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 7/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
docker | latest-everything | 9/14
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.