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Merge pull request #1334 from maxulysse/stubs
WIP: Adding stubs everywhere
2 parents b901cbe + ec409aa commit 1af00b9

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‎CHANGELOG.md‎

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@@ -97,6 +97,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
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- [PR #1329](https://github.com/nf-core/rnaseq/pull/1329) - Remove tags from all nf-test files
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- [PR #1330](https://github.com/nf-core/rnaseq/pull/1330) - Update all nf-core/modules and subworkflows
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- [PR #1331](https://github.com/nf-core/rnaseq/pull/1331) - Adding stubs for local modules
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- [PR #1334](https://github.com/nf-core/rnaseq/pull/1334) - Update all nf-core/modules and subworkflows with stubs
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### Parameters
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‎modules.json‎

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},
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"rsem/calculateexpression": {
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"branch": "master",
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"git_sha": "7c82eda52cb493c4cf500e3fb7d1597a5d766165",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["modules"]
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},
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"rsem/preparereference": {
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"branch": "master",
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"git_sha": "301b088c7e9e00c4c80686411383f07173b54d69",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["modules"]
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},
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"rseqc/bamstat": {
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"branch": "master",
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"git_sha": "9eb22e4d3f28c274b7c498a1564581377349a242",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bam_rseqc"]
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},
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"rseqc/inferexperiment": {
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"branch": "master",
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"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bam_rseqc"]
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},
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"rseqc/innerdistance": {
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"branch": "master",
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"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bam_rseqc"]
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},
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"rseqc/junctionannotation": {
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"branch": "master",
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"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bam_rseqc"]
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},
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"rseqc/junctionsaturation": {
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"branch": "master",
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"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bam_rseqc"]
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},
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"rseqc/readdistribution": {
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"branch": "master",
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"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bam_rseqc"]
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},
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"rseqc/readduplication": {
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"branch": "master",
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"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bam_rseqc"]
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},
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"rseqc/tin": {
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"branch": "master",
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"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bam_rseqc"]
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},
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"salmon/index": {
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},
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"subread/featurecounts": {
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"branch": "master",
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"git_sha": "e5265c217dcfbff7731c40623aaf07538fdd3e1c",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["modules"]
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},
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"summarizedexperiment/summarizedexperiment": {
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},
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"trimgalore": {
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"branch": "master",
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"git_sha": "a98418419ae6c9df3cf6cf108d1e1aba71037d5a",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["fastq_fastqc_umitools_trimgalore"]
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},
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"tximeta/tximport": {
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},
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"ucsc/bedclip": {
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"branch": "master",
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"git_sha": "7c75d01997236f61b9b77399d9933cb36041f2c3",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["bedgraph_bedclip_bedgraphtobigwig"]
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},
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"ucsc/bedgraphtobigwig": {
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},
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"umitools/extract": {
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"branch": "master",
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"git_sha": "d2c5e76f291379f3dd403e48e46ed7e6ba5da744",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": ["fastq_fastqc_umitools_fastp", "fastq_fastqc_umitools_trimgalore"]
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},
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"umitools/prepareforrsem": {
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},
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"fastq_align_hisat2": {
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"branch": "master",
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"git_sha": "2c6b1144ed58b6184ad58fc4e6b6a90219b4bf4f",
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"git_sha": "c60c14b285b89bdd0607e371417dadb80385ad6e",
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"installed_by": ["subworkflows"]
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},
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"fastq_fastqc_umitools_fastp": {
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"branch": "master",
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"git_sha": "b90b5cd93149a1b3be263d916c7234fe0708a71c",
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"git_sha": "db35d26edeafacf9906a517827df621a29adc13d",
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"installed_by": ["subworkflows"]
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},
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"fastq_fastqc_umitools_trimgalore": {

‎modules/nf-core/rsem/calculateexpression/main.nf‎

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‎modules/nf-core/rsem/calculateexpression/tests/main.nf.test‎

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‎modules/nf-core/rsem/calculateexpression/tests/main.nf.test.snap‎

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