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Update trimgalore module to 2.3.0
Bumps the nf-core/trimgalore module from 2.1.0 to 2.3.0 (conda pin, container, and module git_sha), and updates the version string in affected pipeline-level nf-test snapshots. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
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‎CHANGELOG.md‎

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- [PR #1862](https://github.com/nf-core/rnaseq/pull/1862) - Correct the `docs/usage.md` note to state that `--extra_star_align_args` applies to `--aligner star_rsem`, since STAR runs as a standalone step and RSEM quantifies the resulting BAM ([#1857](https://github.com/nf-core/rnaseq/issues/1857))
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- [PR #1864](https://github.com/nf-core/rnaseq/pull/1864) - Bump nf-schema to 2.7.2, fixing boolean CLI parameter validation failures under Nextflow 26.x strict syntax ([#1860](https://github.com/nf-core/rnaseq/issues/1860))
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- [PR #1869](https://github.com/nf-core/rnaseq/pull/1869) - Add pipeline validation error when `--use_rustqc` and `--skip_markduplicates` are set together, since RustQC requires duplicate-marked BAM files ([#1865](https://github.com/nf-core/rnaseq/issues/1865))
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- [PR #1884](https://github.com/nf-core/rnaseq/pull/1884) - Update `trimgalore` module to 2.3.0
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## [[3.26.0](https://github.com/nf-core/rnaseq/releases/tag/3.26.0)] - 2026-05-07
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‎modules.json‎

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},
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"trimgalore": {
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"branch": "master",
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"git_sha": "0991b1032cccfcd9245ef59c6e56d6092ac0b3e7",
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"git_sha": "2a30bfb6a1b4667692d734e33e000a3bd1d74a0d",
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"installed_by": ["fastq_fastqc_umitools_trimgalore", "modules"]
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},
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"tximeta/tximport": {

‎modules/nf-core/trimgalore/environment.yml‎

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‎modules/nf-core/trimgalore/main.nf‎

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‎modules/nf-core/trimgalore/tests/main.nf.test.snap‎

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‎tests/contaminant_screening_input.nf.test.snap‎

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"samtools": "1.23.1"
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},
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"TRIMGALORE": {
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"trimgalore": "2.1.0"
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"trimgalore": "2.3.0"
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},
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"UNTAR_KRAKEN_DB": {
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"samtools": "1.23.1"
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},
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"TRIMGALORE": {
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"trimgalore": "2.1.0"
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"trimgalore": "2.3.0"
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},
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"UNTAR_HISAT2_INDEX": {
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"samtools": "1.23.1"
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},
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"TRIMGALORE": {
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"trimgalore": "2.1.0"
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"trimgalore": "2.3.0"
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"UNTAR_KRAKEN_DB": {
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"subread": "2.0.6"
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"TRIMGALORE": {
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"trimgalore": "2.1.0"
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"trimgalore": "2.3.0"
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"TXIMETA_TXIMPORT": {
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"bioconductor-tximeta": "1.20.1"
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"subread": "2.0.6"
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"TRIMGALORE": {
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"trimgalore": "2.3.0"
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"TXIMETA_TXIMPORT": {
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"samtools": "1.23.1"
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"TRIMGALORE": {
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"trimgalore": "2.1.0"
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"trimgalore": "2.3.0"
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"UNTAR_KRAKEN_DB": {
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‎tests/default.nf.test.snap‎

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"star": "2.7.11b"
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},
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"TRIMGALORE": {
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"trimgalore": "2.1.0"
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"trimgalore": "2.3.0"
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},
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"UNTAR_SALMON_INDEX": {
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"subread": "2.0.6"
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"TRIMGALORE": {
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"trimgalore": "2.1.0"
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"trimgalore": "2.3.0"
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"TXIMETA_TXIMPORT": {
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"bioconductor-tximeta": "1.20.1"

‎tests/featurecounts_group_type.nf.test.snap‎

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"star": "2.7.11b"
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"trimgalore": "2.3.0"
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"star": "2.7.11b"
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"TRIMGALORE": {
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"trimgalore": "2.3.0"
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"TXIMETA_TXIMPORT": {
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"bioconductor-tximeta": "1.20.1"

‎tests/gpu_ribodetector.nf.test.snap‎

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"seqkit": "2.9.0"
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"TRIMGALORE": {
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"trimgalore": "2.1.0"
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"trimgalore": "2.3.0"
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"UNTAR_SALMON_INDEX": {
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"samtools": "1.23.1"
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"TRIMGALORE": {
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"trimgalore": "2.3.0"
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‎tests/hisat2.nf.test.snap‎

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"trimgalore": "2.3.0"
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"UNTAR_HISAT2_INDEX": {
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"subread": "2.0.6"
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"TRIMGALORE": {
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"trimgalore": "2.3.0"
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"UNTAR_HISAT2_INDEX": {
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