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pinin4fjordsclaude
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chore(tximeta/tximport): pull in nf-core/modules#12362
Add conda-forge::jq as a build-time workaround for yq missing its jq runtime dep, and set LC_COLLATE=C in the R template so gene-level row ordering (and output content) is reproducible across environments. Container switches to the Wave community image bundling jq. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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modules.json

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},
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"tximeta/tximport": {
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"branch": "master",
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"git_sha": "77df703775155f3f0f8922f9354501e0289348c2",
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"git_sha": "2e17764b67b7613c0a420c3f13d9360c3377bee8",
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"installed_by": ["quant_tximport_summarizedexperiment", "quantify_pseudo_alignment"]
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},
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"ucsc/bedclip": {

modules/nf-core/tximeta/tximport/environment.yml

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modules/nf-core/tximeta/tximport/main.nf

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modules/nf-core/tximeta/tximport/templates/tximport.r

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modules/nf-core/tximeta/tximport/tests/main.nf.test.snap

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