I am the developer of RiboDetector. I noticed that the pipeline usage page states:
RiboDetector has known issues with ONNX multiprocessing that can cause hangs in containerized environments (Docker, Singularity). This makes it unreliable for production use in Nextflow pipelines. We recommend using SortMeRNA or Bowtie2 for rRNA removal until these issues are resolved upstream. See hzi-bifo/RiboDetector#61 for details.
This issue has been fixed since v0.3.3. It would be great if you can update it. Many thanks!
I am the developer of RiboDetector. I noticed that the pipeline usage page states:
This issue has been fixed since v0.3.3. It would be great if you can update it. Many thanks!