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Clean up Core repos page table display #70

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Merged
mashehu merged 4 commits into from
Dec 11, 2025
Merged

Clean up Core repos page table display #70

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acd4271
fix: clean up Core repos page table display
claude[bot] Aug 23, 2025
d44b19a
fix core_repos query
mashehu Dec 11, 2025
9168485
add links to tables
mashehu Dec 11, 2025
6786155
streamline core_repos table to only query needed tables
mashehu Dec 11, 2025
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18 changes: 16 additions & 2 deletions pages/code/core_repos.md
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Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,20 @@ sidebar_position: 6

```sql core_repos_table
select
*
name,
description,
gh_created_at,
gh_updated_at,
stargazers_count,
watchers_count,
forks_count,
open_issues_count,
topics,
archived,
default_branch,
'https://github.com/nf-core/' || name as github_url
from nfcore_db.core_repos
where archived = false
```

We have several repositories that are not pipelines, but contain code for everything around nf-core (including this page itself).
Expand All @@ -17,4 +29,6 @@ defaultSort={[{ id: 'stargazers_count', desc: true }]}
search=true
wrapTitles=true
totalRow=true
/>
link=github_url
>
</DataTable>
19 changes: 17 additions & 2 deletions sources/nfcore_db/core_repos.sql
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@@ -1,4 +1,19 @@
USE nf_core_stats_bot;

SELECT * EXCLUDE (last_release_date)
FROM github.nfcore_pipelines WHERE category = 'core';
SELECT
p.name,
p.description,
p.gh_created_at,
p.gh_updated_at,
p.stargazers_count,
p.watchers_count,
p.forks_count,
p.open_issues_count,
LIST(t.value) as topics,
p.default_branch,
p.archived,
FROM github.pipelines p
LEFT JOIN github.pipelines__topics t ON p._dlt_id = t._dlt_parent_id
WHERE p.category = 'core'
GROUP BY ALL
ORDER BY p.stargazers_count DESC;
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