Description of feature
Both ONT and PacBio now produce BAM as their default output (uBAM when a reference isn't available), with production of fastqs requiring additional processing.
It would be helpful if the workflow had a step that runs samtools fastq to extract these if the input is a BAM file, to avoid additional preprocessing steps before running.
Description of feature
Both ONT and PacBio now produce BAM as their default output (uBAM when a reference isn't available), with production of fastqs requiring additional processing.
It would be helpful if the workflow had a step that runs
samtools fastqto extract these if the input is a BAM file, to avoid additional preprocessing steps before running.