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Add PanTax

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#745 In nf-core/taxprofiler;

· aidaanva opened on May 27, 2026

MetaPhlAn requires huge amounts of RAM when running with long reads

bugSomething isn't workingSomething isn't working

Status: Open.

#744 In nf-core/taxprofiler;

· jfy133 opened on May 14, 2026

Add an option for BAM input

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#743 In nf-core/taxprofiler;

· oneillkza opened on May 13, 2026

Database file column db_name allows repeated entries bvut should not

bugSomething isn't workingSomething isn't working

Status: Open.

#742 In nf-core/taxprofiler;

· d4straub opened on May 6, 2026

Minor nf-core/tools post-merge tasks

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#740 In nf-core/taxprofiler;

· jfy133 opened on Apr 28, 2026

MultiQC silently skips large samtools stats files due to log_filesize_limit default (50MB)

Status: Open.

#736 In nf-core/taxprofiler;

· Leilanasd opened on Apr 21, 2026

Missing taxids in centrifuge.results.txt

bugSomething isn't workingSomething isn't working

Status: Open.

#722 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Apr 7, 2026

Fastp content in test_falcobbduk.nf.test.snap is empty

bugSomething isn't workingSomething isn't working

Status: Open.

#717 In nf-core/taxprofiler;

· sofstam opened on Apr 3, 2026

New classifier: GuaCAMOLE

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#680 In nf-core/taxprofiler;

· fgp opened on Jan 27, 2026

Kraken2: add option for "--use-daemon" with the k2 wrapper

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#673 In nf-core/taxprofiler;

· Laurenz0908 opened on Nov 27, 2025

Request for a KrakenUniq + Bracken + Krona workflow

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#669 In nf-core/taxprofiler;

· pcantalupo opened on Nov 21, 2025

Feature: Option to output ready TSE -object

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#663 In nf-core/taxprofiler;

· raivo-otus opened on Nov 11, 2025