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Add --help-json flag for machine-readable CLI help #12485

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Add --help-json flag for machine-readable CLI help

Add --help-json flag for machine-readable CLI help #12485

Run time

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Job Run time
Get test file matrix
3s
Run test_test_utils.py with Python 3.10 and Nextflow 25.10.4
34s
Run components/test_components_generate_snapshot.py with Python 3.10 and Nextflow 25.10.4
2m 58s
Run components/test_components_snapshot_test.py with Python 3.10 and Nextflow 25.10.4
54s
Run test_cli.py with Python 3.10 and Nextflow 25.10.4
38s
Run test_components.py with Python 3.10 and Nextflow 25.10.4
40s
Run components/test_components_utils.py with Python 3.10 and Nextflow 25.10.4
40s
Run components/test_completion.py with Python 3.10 and Nextflow 25.10.4
36s
Run pipelines/test_schema.py with Python 3.10 and Nextflow 25.10.4
2m 27s
Run test_pipelines.py with Python 3.10 and Nextflow 25.10.4
38s
Run pipelines/download/test_download.py with Python 3.10 and Nextflow 25.10.4
2m 10s
Run pipelines/download/test_utils.py with Python 3.10 and Nextflow 25.10.4
1m 22s
Run pipelines/test_create_app.py with Python 3.10 and Nextflow 25.10.4
1m 15s
Run pipelines/download/test_singularity.py with Python 3.10 and Nextflow 25.10.4
1m 34s
Run pipelines/download/test_docker.py with Python 3.10 and Nextflow 25.10.4
1m 31s
Run pipelines/lint/test_if_empty_null.py with Python 3.10 and Nextflow 25.10.4
47s
Run pipelines/test_launch.py with Python 3.10 and Nextflow 25.10.4
1m 41s
Run pipelines/download/test_container.py with Python 3.10 and Nextflow 25.10.4
1m 23s
Run pipelines/test_params_file.py with Python 3.10 and Nextflow 25.10.4
51s
Run pipelines/lint/test_template_strings.py with Python 3.10 and Nextflow 25.10.4
52s
Run pipelines/lint/test_merge_markers.py with Python 3.10 and Nextflow 25.10.4
50s
Run pipelines/test_container_configs.py with Python 3.10 and Nextflow 25.10.4
1m 6s
Run pipelines/test_rocrate.py with Python 3.10 and Nextflow 25.10.4
1m 22s
Run pipelines/lint/test_container_configs.py with Python 3.10 and Nextflow 25.10.4
57s
Run pipelines/test_refgenie.py with Python 3.10 and Nextflow 25.10.4
42s
Run pipelines/lint/test_files_unchanged.py with Python 3.10 and Nextflow 25.10.4
49s
Run pipelines/test_create.py with Python 3.10 and Nextflow 25.10.4
39s
Run pipelines/lint/test_multiqc_config.py with Python 3.10 and Nextflow 25.10.4
1m 0s
Run pipelines/test_create_logo.py with Python 3.10 and Nextflow 25.10.4
58s
Run pipelines/lint/test_actions_awstest.py with Python 3.10 and Nextflow 25.10.4
45s
Run pipelines/lint/test_nextflow_config.py with Python 3.10 and Nextflow 25.10.4
1m 13s
Run test_utils.py with Python 3.10 and Nextflow 25.10.4
1m 36s
Run pipelines/lint/test_nf_test_content.py with Python 3.10 and Nextflow 25.10.4
53s
Run pipelines/lint/test_version_consistency.py with Python 3.10 and Nextflow 25.10.4
51s
Run pipelines/lint/test_plugin_includes.py with Python 3.10 and Nextflow 25.10.4
48s
Run subworkflows/test_update.py with Python 3.10 and Nextflow 25.10.4
7m 8s
Run pipelines/test_list.py with Python 3.10 and Nextflow 25.10.4
42s
Run pipelines/lint/test_files_exist.py with Python 3.10 and Nextflow 25.10.4
1m 3s
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.10 and Nextflow 25.10.4
51s
Run pipelines/test_lint.py with Python 3.10 and Nextflow 25.10.4
1m 16s
Run test_datasets/test_test_datasets_utils.py with Python 3.10 and Nextflow 25.10.4
37s
Run test_datasets/test_test_datasets_search.py with Python 3.10 and Nextflow 25.10.4
39s
Run subworkflows/test_patch.py with Python 3.10 and Nextflow 25.10.4
2m 35s
Run test_subworkflows.py with Python 3.10 and Nextflow 25.10.4
40s
Run pipelines/lint/test_configs.py with Python 3.10 and Nextflow 25.10.4
57s
Run pipelines/lint/test_modules_json.py with Python 3.10 and Nextflow 25.10.4
52s
Run pipelines/lint/test_nfcore_yml.py with Python 3.10 and Nextflow 25.10.4
55s
Run subworkflows/test_remove.py with Python 3.10 and Nextflow 25.10.4
2m 4s
Run pipelines/test_bump_version.py with Python 3.10 and Nextflow 25.10.4
1m 9s
Run pipelines/lint/test_rocrate_readme_sync.py with Python 3.10 and Nextflow 25.10.4
49s
Run subworkflows/test_create.py with Python 3.10 and Nextflow 25.10.4
1m 17s
Run test_lint_utils.py with Python 3.10 and Nextflow 25.10.4
42s
Run pipelines/lint/test_actions_schema_validation.py with Python 3.10 and Nextflow 25.10.4
52s
Run subworkflows/test_info.py with Python 3.10 and Nextflow 25.10.4
1m 29s
Run pipelines/test_completion.py with Python 3.10 and Nextflow 25.10.4
39s
Run pipelines/lint/test_actions_nf_test.py with Python 3.10 and Nextflow 25.10.4
50s
Run test_modules.py with Python 3.10 and Nextflow 25.10.4
1m 6s
Run pipelines/test_sync.py with Python 3.10 and Nextflow 25.10.4
1m 46s
Run subworkflows/lint/test_nf_test.py with Python 3.10 and Nextflow 25.10.4
1m 54s
Run pipelines/lint/test_local_component_structure.py with Python 3.10 and Nextflow 25.10.4
46s
Run subworkflows/lint/test_main_nf.py with Python 3.10 and Nextflow 25.10.4
1m 35s
Run subworkflows/lint/test_patch.py with Python 3.10 and Nextflow 25.10.4
1m 14s
Run subworkflows/lint/test_integration.py with Python 3.10 and Nextflow 25.10.4
2m 9s
Run subworkflows/lint/test_local.py with Python 3.10 and Nextflow 25.10.4
1m 7s
Run subworkflows/test_install.py with Python 3.10 and Nextflow 25.10.4
3m 12s
Run modules/test_modules_utils.py with Python 3.10 and Nextflow 25.10.4
2m 11s
Run modules/test_bump_versions.py with Python 3.10 and Nextflow 25.10.4
2m 1s
Run modules/lint/test_module_todos.py with Python 3.10 and Nextflow 25.10.4
1m 57s
Run modules/lint/test_environment_yml.py with Python 3.10 and Nextflow 25.10.4
1m 52s
Run modules/test_patch.py with Python 3.10 and Nextflow 25.10.4
2m 17s
Run modules/lint/test_module_lint_integration.py with Python 3.10 and Nextflow 25.10.4
1m 54s
Run modules/lint/test_meta_yml.py with Python 3.10 and Nextflow 25.10.4
3m 10s
Run modules/test_info.py with Python 3.10 and Nextflow 25.10.4
1m 55s
Run modules/lint/test_module_tests.py with Python 3.10 and Nextflow 25.10.4
3m 27s
Run modules/lint/test_main_nf.py with Python 3.10 and Nextflow 25.10.4
1m 47s
Run modules/test_list.py with Python 3.10 and Nextflow 25.10.4
2m 47s
Run modules/lint/test_patch.py with Python 3.10 and Nextflow 25.10.4
1m 39s
Run modules/test_remove.py with Python 3.10 and Nextflow 25.10.4
2m 7s
Run subworkflows/test_list.py with Python 3.10 and Nextflow 25.10.4
1m 29s
Run modules/test_modules_json.py with Python 3.10 and Nextflow 25.10.4
2m 50s
Run modules/lint/test_module_lint_remotes.py with Python 3.10 and Nextflow 25.10.4
1m 53s
Run modules/lint/test_lint_utils.py with Python 3.10 and Nextflow 25.10.4
1m 29s
Run modules/lint/test_module_lint_local.py with Python 3.10 and Nextflow 25.10.4
1m 40s
Run modules/lint/test_module_version.py with Python 3.10 and Nextflow 25.10.4
1m 34s
Run modules/test_create.py with Python 3.10 and Nextflow 25.10.4
2m 30s
Run modules/lint/test_module_deprecations.py with Python 3.10 and Nextflow 25.10.4
1m 50s
Run modules/test_update.py with Python 3.10 and Nextflow 25.10.4
3m 22s
Run modules/test_install.py with Python 3.10 and Nextflow 25.10.4
2m 16s
Run modules/lint/test_module_changes.py with Python 3.10 and Nextflow 25.10.4
1m 38s
Get test file matrix
3s
Run components/test_components_snapshot_test.py with Python 3.10 and Nextflow 25.10.4
54s
Run components/test_components_utils.py with Python 3.10 and Nextflow 25.10.4
40s
Run test_cli.py with Python 3.10 and Nextflow 25.10.4
38s
Run components/test_completion.py with Python 3.10 and Nextflow 25.10.4
36s
Run test_test_utils.py with Python 3.10 and Nextflow 25.10.4
34s
Run test_components.py with Python 3.10 and Nextflow 25.10.4
40s
Run components/test_components_generate_snapshot.py with Python 3.10 and Nextflow 25.10.4
2m 58s
Run test_lint_utils.py with Python 3.10 and Nextflow 25.10.4
42s
Run pipelines/download/test_docker.py with Python 3.10 and Nextflow 25.10.4
1m 31s
Run test_pipelines.py with Python 3.10 and Nextflow 25.10.4
38s
Run pipelines/download/test_download.py with Python 3.10 and Nextflow 25.10.4
2m 10s
Run pipelines/download/test_utils.py with Python 3.10 and Nextflow 25.10.4
1m 22s
Run pipelines/test_container_configs.py with Python 3.10 and Nextflow 25.10.4
1m 6s
Run pipelines/test_launch.py with Python 3.10 and Nextflow 25.10.4
1m 41s
Run pipelines/download/test_container.py with Python 3.10 and Nextflow 25.10.4
1m 23s
Run pipelines/download/test_singularity.py with Python 3.10 and Nextflow 25.10.4
1m 34s
Run pipelines/test_schema.py with Python 3.10 and Nextflow 25.10.4
2m 27s
Run pipelines/test_params_file.py with Python 3.10 and Nextflow 25.10.4
51s
Run pipelines/test_create_app.py with Python 3.10 and Nextflow 25.10.4
1m 15s
Run pipelines/test_refgenie.py with Python 3.10 and Nextflow 25.10.4
42s
Run pipelines/test_lint.py with Python 3.10 and Nextflow 25.10.4
1m 16s
Run pipelines/test_rocrate.py with Python 3.10 and Nextflow 25.10.4
1m 22s
Run pipelines/test_create_logo.py with Python 3.10 and Nextflow 25.10.4
58s
Run pipelines/lint/test_container_configs.py with Python 3.10 and Nextflow 25.10.4
57s
Run pipelines/test_create.py with Python 3.10 and Nextflow 25.10.4
39s
Run pipelines/lint/test_if_empty_null.py with Python 3.10 and Nextflow 25.10.4
47s
Run pipelines/lint/test_files_unchanged.py with Python 3.10 and Nextflow 25.10.4
49s
Run pipelines/lint/test_modules_json.py with Python 3.10 and Nextflow 25.10.4
52s
Run pipelines/lint/test_merge_markers.py with Python 3.10 and Nextflow 25.10.4
50s
Run pipelines/lint/test_multiqc_config.py with Python 3.10 and Nextflow 25.10.4
1m 0s
Run pipelines/lint/test_nf_test_content.py with Python 3.10 and Nextflow 25.10.4
53s
Run pipelines/lint/test_actions_nf_test.py with Python 3.10 and Nextflow 25.10.4
50s
Run pipelines/lint/test_rocrate_readme_sync.py with Python 3.10 and Nextflow 25.10.4
49s
Run pipelines/lint/test_version_consistency.py with Python 3.10 and Nextflow 25.10.4
51s
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.10 and Nextflow 25.10.4
51s
Run pipelines/lint/test_actions_awstest.py with Python 3.10 and Nextflow 25.10.4
45s
Run pipelines/lint/test_configs.py with Python 3.10 and Nextflow 25.10.4
57s
Run pipelines/lint/test_template_strings.py with Python 3.10 and Nextflow 25.10.4
52s
Run pipelines/lint/test_plugin_includes.py with Python 3.10 and Nextflow 25.10.4
48s
Run pipelines/lint/test_nextflow_config.py with Python 3.10 and Nextflow 25.10.4
1m 13s
Run pipelines/lint/test_nfcore_yml.py with Python 3.10 and Nextflow 25.10.4
55s
Run pipelines/lint/test_local_component_structure.py with Python 3.10 and Nextflow 25.10.4
46s
Run pipelines/lint/test_files_exist.py with Python 3.10 and Nextflow 25.10.4
1m 3s
Run pipelines/test_bump_version.py with Python 3.10 and Nextflow 25.10.4
1m 9s
Run pipelines/lint/test_actions_schema_validation.py with Python 3.10 and Nextflow 25.10.4
52s
Run pipelines/test_sync.py with Python 3.10 and Nextflow 25.10.4
1m 46s
Run pipelines/test_list.py with Python 3.10 and Nextflow 25.10.4
42s
Run pipelines/test_completion.py with Python 3.10 and Nextflow 25.10.4
39s
Run test_datasets/test_test_datasets_search.py with Python 3.10 and Nextflow 25.10.4
39s
Run test_subworkflows.py with Python 3.10 and Nextflow 25.10.4
40s
Run test_datasets/test_test_datasets_utils.py with Python 3.10 and Nextflow 25.10.4
37s
Run subworkflows/test_update.py with Python 3.10 and Nextflow 25.10.4
7m 8s
Run test_modules.py with Python 3.10 and Nextflow 25.10.4
1m 6s
Run test_utils.py with Python 3.10 and Nextflow 25.10.4
1m 36s
Run subworkflows/test_info.py with Python 3.10 and Nextflow 25.10.4
1m 29s
Run subworkflows/test_patch.py with Python 3.10 and Nextflow 25.10.4
2m 35s
Run subworkflows/test_remove.py with Python 3.10 and Nextflow 25.10.4
2m 4s
Run subworkflows/test_create.py with Python 3.10 and Nextflow 25.10.4
1m 17s
Run subworkflows/lint/test_integration.py with Python 3.10 and Nextflow 25.10.4
2m 9s
Run subworkflows/lint/test_nf_test.py with Python 3.10 and Nextflow 25.10.4
1m 54s
Run subworkflows/lint/test_local.py with Python 3.10 and Nextflow 25.10.4
1m 7s
Run subworkflows/lint/test_main_nf.py with Python 3.10 and Nextflow 25.10.4
1m 35s
Run modules/test_update.py with Python 3.10 and Nextflow 25.10.4
3m 22s
Run subworkflows/test_install.py with Python 3.10 and Nextflow 25.10.4
3m 12s
Run modules/test_modules_utils.py with Python 3.10 and Nextflow 25.10.4
2m 11s
Run modules/test_info.py with Python 3.10 and Nextflow 25.10.4
1m 55s
Run subworkflows/test_list.py with Python 3.10 and Nextflow 25.10.4
1m 29s
Run modules/test_bump_versions.py with Python 3.10 and Nextflow 25.10.4
2m 1s
Run modules/test_create.py with Python 3.10 and Nextflow 25.10.4
2m 30s
Run modules/test_modules_json.py with Python 3.10 and Nextflow 25.10.4
2m 50s
Run modules/test_remove.py with Python 3.10 and Nextflow 25.10.4
2m 7s
Run modules/lint/test_module_lint_integration.py with Python 3.10 and Nextflow 25.10.4
1m 54s
Run modules/test_patch.py with Python 3.10 and Nextflow 25.10.4
2m 17s
Run modules/lint/test_environment_yml.py with Python 3.10 and Nextflow 25.10.4
1m 52s
Run modules/lint/test_module_todos.py with Python 3.10 and Nextflow 25.10.4
1m 57s
Run modules/lint/test_lint_utils.py with Python 3.10 and Nextflow 25.10.4
1m 29s
Run modules/lint/test_module_tests.py with Python 3.10 and Nextflow 25.10.4
3m 27s
Run modules/lint/test_module_changes.py with Python 3.10 and Nextflow 25.10.4
1m 38s
Run modules/lint/test_meta_yml.py with Python 3.10 and Nextflow 25.10.4
3m 10s
Run modules/lint/test_module_lint_remotes.py with Python 3.10 and Nextflow 25.10.4
1m 53s
Run modules/lint/test_module_version.py with Python 3.10 and Nextflow 25.10.4
1m 34s
Run modules/lint/test_patch.py with Python 3.10 and Nextflow 25.10.4
1m 39s
Run subworkflows/lint/test_patch.py with Python 3.10 and Nextflow 25.10.4
1m 18s
Run modules/lint/test_module_lint_local.py with Python 3.10 and Nextflow 25.10.4
1m 40s
Run modules/lint/test_module_deprecations.py with Python 3.10 and Nextflow 25.10.4
1m 50s
Run modules/lint/test_main_nf.py with Python 3.10 and Nextflow 25.10.4
1m 47s
Run modules/test_install.py with Python 3.10 and Nextflow 25.10.4
2m 16s
Run modules/test_list.py with Python 3.10 and Nextflow 25.10.4
2m 47s
4h 25m 10s