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Pull requests list

Isolate test runs to avoid cross talks of Nextflow assets bug Something isn't working pipeline-testing
#4175 opened Apr 4, 2026 by muffato Loading…
3 tasks done
5
Fix: Issue #4173 awaiting-changes Needs changes after a review. Remove label when ready to be reviewed again. awaiting-feedback
#4174 opened Apr 4, 2026 by sonusonukgupta-gif Loading…
1
Update dawidd6/action-download-artifact action to v20
#4171 opened Apr 3, 2026 by renovate bot Loading…
1 task
2
Update GitHub Actions
#4170 opened Apr 3, 2026 by renovate bot Loading…
1 task
2
Bump aiohttp from 3.13.3 to 3.13.4 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4168 opened Apr 1, 2026 by dependabot bot Loading…
1
Issues/4160 remove pytest
#4167 opened Apr 1, 2026 by JulianFlesch Loading…
4 tasks
4.0.0
1
Update pre-commit hook pre-commit/mirrors-mypy to v1.20.0
#4165 opened Apr 1, 2026 by renovate bot Loading…
1 task
1
[DO NOT MERGE] test esm version of setup-nf-test [skip changelog]
#4164 opened Apr 1, 2026 by mashehu Loading…
2
linting: make version topics mandatory
#4163 opened Apr 1, 2026 by mashehu Loading… 4.0.0
1
fix(deps): update dependency textual to v8.2.1
#4161 opened Apr 1, 2026 by renovate bot Loading…
1 task
2
Update python:3.14-slim Docker digest to fb83750
#4159 opened Mar 31, 2026 by renovate bot Loading…
1 task
2
Update mcr.microsoft.com/devcontainers/miniconda Docker digest to 26b252e
#4158 opened Mar 31, 2026 by renovate bot Loading…
1 task
2
Update dependency setuptools to v82
#4154 opened Mar 31, 2026 by renovate bot Loading…
1 task
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.15.9
#4152 opened Mar 31, 2026 by renovate bot Loading…
1 task
1
Update mcr.microsoft.com/devcontainers/base Docker tag to v2.1.7
#4151 opened Mar 31, 2026 by renovate bot Loading…
1 task
1
Bump pygments from 2.19.2 to 2.20.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4149 opened Mar 30, 2026 by dependabot bot Loading…
1
Parse manifest.contributors to fill in the RO-Crate
#4147 opened Mar 29, 2026 by muffato Loading…
2 of 4 tasks
4.1.0
@muffato
9
Request org details to fill in more template fields
#4146 opened Mar 29, 2026 by muffato • Draft
4 tasks
4.1.0
@muffato
12
Bump requests from 2.32.5 to 2.33.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4136 opened Mar 26, 2026 by dependabot bot Loading…
1
Replace all links in pipeline template to upcoming docs-v2 overhaul equivalents
#4135 opened Mar 25, 2026 by jfy133 Loading…
4 tasks
4.0.0
15
Add TTY detection to prevent CLI hanging in non-interactive sessions
#4130 opened Mar 23, 2026 by ewels Loading…
5 tasks
4.0.0
17
Bump pyjwt from 2.10.1 to 2.12.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4120 opened Mar 14, 2026 by dependabot bot Loading…
1
added "auto process" screen and extracted labels/names from nf
#4117 opened Mar 13, 2026 by imkhoibui Loading…
4 tasks
1
template: workflow output for multiQC
#4093 opened Mar 6, 2026 by maxulysse Loading…
4 tasks
5.0.0
4
Lock file maintenance
#4055 opened Feb 23, 2026 by renovate bot Loading…
1 task
1
ProTip! Adding no:label will show everything without a label.