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Pull requests: nf-core/tools

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Pull requests list

Bump pyjwt from 2.10.1 to 2.12.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4120 opened Mar 14, 2026 by dependabot bot Loading…
1
added "auto process" screen and extracted labels/names from nf
#4117 opened Mar 13, 2026 by imkhoibui Loading…
4 tasks
1
Configbuilder: Add serial library
#4110 opened Mar 12, 2026 by nbtm-sh Loading…
4 tasks
1
template: workflow output for multiQC
#4093 opened Mar 6, 2026 by maxulysse Loading…
4 tasks
4
Fix GHA notification for AWS full tests job
#4092 opened Mar 6, 2026 by maxulysse Loading…
4 tasks
5
Update GitHub Actions (major)
#4091 opened Mar 6, 2026 by renovate bot Loading…
1 task
2
Pin dependencies
#4090 opened Mar 6, 2026 by renovate bot Loading…
1 task
3
linting: capture correct error for invalid .nf-core.yml
#4080 opened Mar 4, 2026 by mashehu Loading…
1
Update dependency textual to v8
#4078 opened Mar 4, 2026 by renovate bot Loading…
1 task
2
Fix get_wf_files to use git ls-files
#4068 opened Feb 28, 2026 by jonasscheid Loading…
1
Lock file maintenance
#4055 opened Feb 23, 2026 by renovate bot Loading…
1 task
2
add missing lint test documentation and add pre-commit check for them
#4052 opened Feb 18, 2026 by mashehu Loading…
1
linting: lint for correct syntax for compressed files in stubs
#4048 opened Feb 17, 2026 by mashehu Loading…
1
Add more ruff rules (B, PTH, RSE, SIM, C4, BLE, A)
#4034 opened Feb 11, 2026 by mashehu Loading…
5 of 10 tasks
4
Fix incompatible Docker Daemon Version in Devcontainer
#4029 opened Feb 4, 2026 by JulianFlesch • Draft
4 tasks
1
TEMPLATE: Add bioconda channel to conda setup
#3987 opened Jan 19, 2026 by maxulysse Loading…
4 tasks
4
Escape original merge branch to compile regex
#3984 opened Jan 16, 2026 by rrahn Loading…
3 of 4 tasks
1
added helpful comment for common gotcha - prefix scoping
#3982 opened Jan 15, 2026 by ammaraziz Loading…
1 of 2 tasks
1
split subworkflow/test_lint into separate files
#3965 opened Dec 10, 2025 by mashehu Loading…
1
Command to generate pipeline container config files
#3955 opened Dec 2, 2025 by mirpedrol Loading…
2 of 5 tasks
3.6.0
18
Implement wave container commands
#3954 opened Dec 2, 2025 by JulianFlesch • Draft
3 of 4 tasks
3.6.0
@ningyuxin1999
29
Configbuilder: nf-core configs create
#3949 opened Dec 1, 2025 by mirpedrol Loading…
1
1
sync: don't overwrite the defaultBranch if already set in nextflow.config
#3939 opened Nov 27, 2025 by mashehu Loading…
1
Pipeline template: New pre-commit hooks (large files, merge conflicts)
#3935 opened Nov 26, 2025 by MatthiasZepper Loading…
2 of 4 tasks
17
feat(template): trigger nf-test full run if scripts in bin modified
#3897 opened Nov 13, 2025 by prototaxites Loading…
2 of 4 tasks
3.6.0
4
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