Fix duplicate -b short flag in pipelines sync
#12486
ewelspytest.yml
on: pull_request
Get test file matrix
3s
Matrix: test
Annotations
1 error and 5 warnings
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Run modules/test_list.py with Python 3.10 and Nextflow 25.10.4
Process completed with exit code 1.
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Run pipelines/download/test_container.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_utils.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_singularity.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_docker.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_download.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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