Update GitHub Actions #12493
renovate[bot]pytest.yml
on: push
Get test file matrix
6s
Matrix: test
Annotations
10 warnings
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Run pipelines/download/test_container.py with Python 3.10 and Nextflow latest-stable
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_docker.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_container.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_docker.py with Python 3.10 and Nextflow latest-stable
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_utils.py with Python 3.10 and Nextflow latest-stable
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_utils.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_singularity.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_singularity.py with Python 3.10 and Nextflow latest-stable
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_download.py with Python 3.10 and Nextflow 25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run pipelines/download/test_download.py with Python 3.10 and Nextflow latest-stable
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: eWaterCycle/setup-apptainer@4bb22c52d4f63406c49e94c804632975787312b3. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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