dev -> main for 4.1.0
#85
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| name: CodSpeed benchmarks | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| paths: | |
| - codspeed.yml | |
| - nf_core/**/*.py | |
| pull_request: | |
| paths: | |
| - codspeed.yml | |
| - nf_core/**/*.py | |
| workflow_dispatch: | |
| # Cancel if a newer run with the same workflow name is queued | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| id-token: write # for OpenID Connect authentication with CodSpeed | |
| jobs: | |
| startup-benchmarks: | |
| name: Run start-up benchmarks | |
| runs-on: codspeed-macro | |
| steps: | |
| - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 | |
| name: Check out source-code repository | |
| - name: Set up Python | |
| uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7 | |
| with: | |
| python-version: "3.14" | |
| - name: Install Nextflow | |
| uses: nf-core/setup-nextflow@893c28b667aedeba26e37f296d260ccc5bc4d914 # v3 | |
| with: | |
| version: ${{ github.event.inputs.nextflow-version || matrix.nextflow-version }} | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 | |
| with: | |
| enable-cache: true | |
| - name: Install dependencies | |
| run: uv sync --all-extras | |
| # Clone nf-core/modules into the local cache here, while network is | |
| # available. The modules-install benchmark then runs entirely offline | |
| # (no per-round fetch), so it stays deterministic even if the CodSpeed | |
| # step sandboxes network during measurement. | |
| - name: Warm nf-core/modules cache | |
| run: uv run python -c "from nf_core.modules.modules_repo import ModulesRepo; ModulesRepo()" | |
| # These benchmarks spawn a fresh interpreter per round to measure | |
| # import/start-up cost, which CodSpeed's instruction-counting | |
| # "simulation" instrument can't see. Use "walltime" mode instead. | |
| - name: Run start-up benchmarks | |
| uses: CodSpeedHQ/action@88472375d0a4572cf70a9f1fe3a4e0ab8da1b924 # v5.0.1 | |
| with: | |
| mode: walltime | |
| run: uv run pytest benchmarks/test_startup_benchmarks.py --codspeed |