use correct key for conda configs

Author: mashehu

nf_core/pipelines/containers_utils.py

@@ -184,8 +184,9 @@ def generate_container_configs(
         for platform, module_containers in containers.items():
             if not module_containers:
                 continue
+            container_key = "conda" if platform.startswith("conda_lock_") else "container"
             lines = [
-                f"process {{ withName: '{module_name}' {{ container = '{container}' }} }}\n"
+                f"process {{ withName: '{module_name}' {{ {container_key} = '{container}' }} }}\n"
                 for module_name, container in sorted(module_containers.items())
             ]
             config_path = self.workflow_directory / "conf" / f"containers_{platform}.config"

tests/pipelines/test_container_configs.py

@@ -67,7 +67,8 @@ def test_generate_all_container_configs(self) -> None:
             with cfg_path.open("r") as fh:
                 content = fh.readlines()
                 value = fastqc_meta_yml["containers"][runtime][arch][protocol]
-                assert f"process {{ withName: 'FASTQC' {{ container = '{value}' }} }}\n" in content
+                key = "conda" if p_name.startswith("conda_lock_") else "container"
+                assert f"process {{ withName: 'FASTQC' {{ {key} = '{value}' }} }}\n" in content
 
     def test_generate_container_configs_new_module_injected(self) -> None:
         """new_module_name/path are used when nextflow inspect doesn't yet know about the module."""
@@ -96,7 +97,8 @@ def test_generate_container_configs_new_module_injected(self) -> None:
             cfg_path = conf_dir / f"containers_{p_name}.config"
             assert cfg_path.exists()
             value = fastqc_meta_yml["containers"][runtime][arch][protocol]
-            assert f"process {{ withName: 'FASTQC' {{ container = '{value}' }} }}\n" in cfg_path.read_text()
+            key = "conda" if p_name.startswith("conda_lock_") else "container"
+            assert f"process {{ withName: 'FASTQC' {{ {key} = '{value}' }} }}\n" in cfg_path.read_text()
 
     def test_generate_container_configs_removes_stale_entries(self) -> None:
         """Stale config files are deleted when all their modules have been removed."""