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b9cfdf1
Add Okinawa local hub for March 2026 hackathon
leapicard e62f9d5
Add project: genephylo for March 2026 hackathon
leapicard ea2d2bf
Apply suggestion from @mashehu
mashehu 41d1ce1
Merge branch 'main' into add-genephylo
leapicard ede34d7
[automated] Fix code linting
nf-core-bot 13dfd0b
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mashehu 9730c56
Merge branch 'main' into add-genephylo
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sites/main-site/src/content/hackathon-projects/hackathon-march-2026/genephylo.md
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| --- | ||
| title: nf-core/genephylo | ||
| category: pipelines | ||
| slack: "https://nfcore.slack.com/archives/C09T9QZPAAZ" | ||
| location: Okinawa and online | ||
| leaders: | ||
| leapicard: | ||
| name: Lea Picard | ||
| slack: "https://nfcore.slack.com/team/U095EECSC86" | ||
| --- | ||
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| This project aims to make progress the first version of `genephylo`. | ||
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| We welcome contributors at any level of experience. | ||
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| ## Goal | ||
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| Add new features to the pipeline, develop the corresponding nf-core modules and deliver a first working version of the pipeline. | ||
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| ## Tasks | ||
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| 1. Write module for macse refineAlignment and implement to pipeline | ||
| 2. Write module for treerecs and implement to pipeline | ||
| 3. Implement ORF detection | ||
| 4. Extract and convert relevant sections of multiplesequencealign as a subworkflow | ||
| 5. Integrate subworkflow into the pipeline | ||
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| ## Where | ||
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| In-person (Okinawa hub) and online. | ||
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