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Fix TTL/RDF generation, working-with-data.md download links, and publish examples/output #125

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Merged
HendrikBorgelt merged 5 commits into from
Jul 14, 2026
Merged

Fix TTL/RDF generation, working-with-data.md download links, and publish examples/output #125

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602b25b
Fix working-with-data.md download-button relative paths
HendrikBorgelt Jul 14, 2026
9a9f9c5
Fix TTL/RDF generation: missing namespace prefixes and bare unit codes
HendrikBorgelt Jul 14, 2026
c3c46cd
Publish examples/output and regenerate derived artifacts
HendrikBorgelt Jul 14, 2026
d46674c
Request ttl output now that generation is fixed
HendrikBorgelt Jul 14, 2026
f1e0bb8
Add RDF download button and fix remaining namespace propagation gaps
HendrikBorgelt Jul 14, 2026
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13 changes: 5 additions & 8 deletions .github/workflows/main.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -69,14 +69,11 @@ jobs:
- name: Run test suite
run: just test

# examples/output/ is generated by `just test` (linkml-run-examples,
# json + yaml) but is git-ignored -- archive it from one matrix leg
# so it's inspectable without needing a local checkout. ttl is
# deliberately not requested here: it currently fails partway
# through the example set on a pre-existing linkml_runtime bug
# (rdflib_dumper mishandling certain CURIEs), unrelated to schema
# content -- not a "major error" worth blocking CI over, but not
# worth generating broken output for either.
# examples/output/ (json + yaml + ttl) is generated by `just test`
# (linkml-run-examples) and is tracked in the repo -- archive it from
# one matrix leg too, so a specific run's output is inspectable as a
# build artifact without needing a local checkout or waiting on the
# next commit.
- name: Upload example validation output
if: matrix.python-version == '3.13'
uses: actions/upload-artifact@v7
Expand Down
Binary file modified docs/assets/coremeta4cat_vocabulary.xlsx
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140 changes: 70 additions & 70 deletions docs/assets/examples/CatalysisDataset-2d6m-exeb.json
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664 changes: 664 additions & 0 deletions docs/assets/examples/CatalysisDataset-2d6m-exeb.ttl
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140 changes: 70 additions & 70 deletions docs/assets/examples/CatalysisDataset-2d6m-exeb.yaml
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88 changes: 44 additions & 44 deletions docs/assets/examples/CatalysisDataset-32x1-99x6.json
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Original file line number Diff line number Diff line change
Expand Up @@ -474,7 +474,7 @@
{
"value": 119.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -488,19 +488,19 @@
{
"value": 1.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 0.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 118.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -514,19 +514,19 @@
{
"value": 2.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 2.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 116.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -540,19 +540,19 @@
{
"value": 1.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 2.5,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 105.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -566,19 +566,19 @@
{
"value": 2.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 3.7,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 112.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -592,19 +592,19 @@
{
"value": 1.9,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 4.6,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 108.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand Down Expand Up @@ -702,7 +702,7 @@
{
"value": 126.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -716,19 +716,19 @@
{
"value": 2.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 1.1,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 118.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -742,19 +742,19 @@
{
"value": 1.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 2.6,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 98.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -768,19 +768,19 @@
{
"value": 2.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 4.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 72.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand Down Expand Up @@ -878,19 +878,19 @@
{
"value": 1.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 0.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 118.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -904,19 +904,19 @@
{
"value": 1.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 2.5,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 105.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -930,19 +930,19 @@
{
"value": 1.9,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 4.6,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 108.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand Down Expand Up @@ -1040,19 +1040,19 @@
{
"value": 2.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 1.1,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 118.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -1066,19 +1066,19 @@
{
"value": 1.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 2.6,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 98.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand All @@ -1092,19 +1092,19 @@
{
"value": 2.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured Pd loading (icp_results.txt)"
},
{
"value": 4.8,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/MassFraction",
"unit": "PERCENT",
"unit": "https://qudt.org/vocab/unit/PERCENT",
"description": "ICP-AES measured P loading (icp_results.txt)"
},
{
"value": 72.0,
"has_quantity_type": "http://qudt.org/vocab/quantitykind/SpecificArea",
"unit": "M2-PER-GM",
"unit": "https://qudt.org/vocab/unit/M2-PER-GM",
"description": "BET specific surface area (bet_results.txt)"
}
]
Expand Down
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