Update docs, test fixtures, and test loader - #17
Merged
Conversation
Adjust docs and mkdocs config (switch Simulation emoji token and enable pymdownx.emoji with twemoji/svg). Add Reaction-001 fixture, remove Simulation-001, and normalize/update Characterization-001 and Synthesis-001 YAML fixtures (IDs, units, new fields like realized_plan/evaluated_entity/had_input_entity, clearer descriptions). Refactor tests/test_data.py to import src.catcore.datamodel.catcore and use linkml_runtime.yaml_loader.load for loading target classes, removing the previous custom polymorphic-instantiation logic and yaml dependency. These changes align test data with the loader/schema and simplify test loading.
Contributor
|
Remove product identification method from Reaction-001.yaml
Update project branding by replacing occurrences of 'CatCore' with 'CoreMeta4Cat' in documentation (docs/about.md, docs/index.md). Remove two obsolete test fixtures: tests/data/valid/Characterization-001.yaml and tests/data/valid/Reaction-001.yaml.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Adjust docs and mkdocs config (switch Simulation emoji token and enable pymdownx.emoji with twemoji/svg). Add Reaction-001 fixture, remove Simulation-001, and normalize/update Characterization-001 and Synthesis-001 YAML fixtures (IDs, units, new fields like realized_plan/evaluated_entity/had_input_entity, clearer descriptions). Refactor tests/test_data.py to import src.catcore.datamodel.catcore and use linkml_runtime.yaml_loader.load for loading target classes, removing the previous custom polymorphic-instantiation logic and yaml dependency. These changes align test data with the loader/schema and simplify test loading.