Aerosols, miscibility, Kzz, and software tests

Substantial additions to AGNI. These include initial support for aerosols/hazes, immisicible de-mixing of water, a reworked Kzz scheme, and migration to FormingWorlds/SOCRATES from my personal repo. Given these changes, and some upcoming plans, I also reworked the test infrastructure and brought the coverage to 71%. The plots have also been improved. The documentation has been slightly expanded, and I have used Copilot to perform an audit of the whole codebase in order to search for errors or other potential inconsistencies.

Pull requests

• Migration to new SOCRATES repo by @nichollsh in #173
• Support for aerosol radiative effects and updates to cloud scheme by @nichollsh in #174
• Audit of code+docs with copilot. Additional Kzz parametrisations. by @nichollsh in #176
• Improve test coverage reporting, and increase test coverage to 70% by @nichollsh in #179
• Set aerosol MMR from condensation, initial H2O-H2 demixing support, update tests/docs/install by @nichollsh in #180

Full Changelog: 1.8.9...1.9.4

Documentation, configuration, grids, and deep heating

What's Changed

• Deep heating functionality with gaussian energy profile injection into atmosphere layers
• Improve test coverage by @nichollsh in #169
• Rework AGNI docs to Diataxis structure by @nichollsh in #170
• Updated hydrostatic-gravity integrator for stability and performance improvements
• Improvements to grid functionality
• Tidied up git history, which substantially reduces repo size
• Added more default elements
• New options for changing how 'convergence' of the model is defined (default behaviour unchanged)

Full Changelog: 1.8.1...1.8.9

Condensation+chemistry, reworked user interfaces, improved model stability

What's Changed

• Expand tests and methods for bug reporting by @nichollsh in #152
• Version 1.8.0 - chemistry, sensible heating, model reliability, and other changes. by @nichollsh in #154
• Hn/grid by @nichollsh in #155
• Hn/morels by @nichollsh in #156

Full Changelog: 1.7.12...1.8.1

1.7.12

What's Changed

• Bugfix in convection formulation by @nichollsh in #150

Full Changelog: 1.7.11...1.7.12

Metadata and documentation

Changes

• Enforced requirement of Julia 1.11
• Update metadata for Zenodo release and other documentation
• Add links to FWL repos
• Update workflow permissions to resolve security warning

Full Changelog: 1.7.10...1.7.11

Inverse climate models. Updates to tests, notebooks, and docs.

What's Changed

• Hn/testsuites by @nichollsh in #143
• Organise notebooks. Add inverse climate model solvers. Update docs by @nichollsh in #144

Full Changelog: 1.7.8...1.7.10

Grids of models, and more configuration options

What's Changed

• Set composition by metallicity, script for running grids of models by @nichollsh in #138
• New options exposed to user by @nichollsh in #140
• Hn/fcopts by @nichollsh in #141

Full Changelog: 1.7.5...1.7.8

Double-grey radiative transfer, diagnostic variables, and minor things

What's Changed

• Track ocean formation, area, and depth by @nichollsh in #129
• Calculate thermal conductivity and estimate diagnostic quantities by @nichollsh in #134
• Double-grey radiative transfer by @nichollsh in #135
• Option for turning cloud radiative properties off by @nichollsh in #136

Full Changelog: 1.7.0...v1.7.5

Restructure repo and moved thermo data elsewhere

• Removed old large files from Git history, resulting in a repo file size reduction of 7.5x
• Notebook for testing AQUA interpolation
• Restructure to repo. Moved thermodynamic data to OSF.
• Improved error messages and documentation

Full Changelog: 0.9.0...0.10.0

Version 0.9.0

• Updated documentation
• Updated JOSS paper
• Set radiative Kzz (with configuration file option)
• Updated tutorials

Full Changelog: v0.8.4...0.9.0