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Adding launch link for Biolucida viewer #50

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22 changes: 19 additions & 3 deletions app/main.py
Original file line number Diff line number Diff line change
Expand Up @@ -29,8 +29,6 @@
from app.serializer import ContactRequestSchema
from app.utilities import img_to_base64_str

from app.manifest_name_to_discover_name import name_map
from timeit import default_timer as timer

app = Flask(__name__)
# set environment variable
Expand Down Expand Up @@ -206,7 +204,12 @@ def thumbnail_from_neurolucida_file():
return abort(400, description=f"Query arguments are not valid.")

url = f"{Config.NEUROLUCIDA_HOST}/thumbnail"
response = requests.get(url, params=query_args)

try:
response = requests.get(url, params=query_args)
except requests.exceptions.SSLError:
response = type('ResponseObject', (object,), {'status_code': 400})

if response.status_code == 200:
if response.headers.get('Content-Type', 'unknown') == 'image/png':
return base64.b64encode(response.content)
Expand Down Expand Up @@ -752,13 +755,26 @@ def image_search_by_dataset_id(dataset_id):
return response.json()


@app.route("/image_blv_link/<image_id>", methods=["GET"])
def image_blv_link(image_id):
url = f'{Config.BIOLUCIDA_ENDPOINT}/image/blv_link/{image_id}'
result = requests.request("GET", url)

response = result.json()
if response['status'] == 'success':
return response['link']

return ''


@app.route("/image_xmp_info/<image_id>", methods=["GET"])
def image_xmp_info(image_id):
url = Config.BIOLUCIDA_ENDPOINT + "/image/xmpmetadata/{0}".format(image_id)
result = requests.request("GET", url)

response = result.json()
if response['status'] == 'success':

xml = ElementTree.fromstring(response['data'])
ns = {'xmp': 'http://ns.adobe.com/xap/1.0/', 'rdf': 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'}

Expand Down
12 changes: 11 additions & 1 deletion tests/test_biolucida.py
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
import pytest
import unittest

from app.main import authenticate_biolucida, thumbnail_by_image_id, image_info_by_image_id
from app.main import authenticate_biolucida, thumbnail_by_image_id, image_info_by_image_id, image_blv_link
from app.main import Biolucida

from app import app
Expand Down Expand Up @@ -49,5 +49,15 @@ def test_image_xmp_info(client):
assert r.json['pixel_width'] == "0.415133"


def test_image_blv_link_success(client):
r = client.get('/image_blv_link/2720')
assert 'https://sparc.biolucida.net:443/link?l=zCl4b1' == r.data.decode()


def test_image_blv_link_failure(client):
r = client.get('/image_blv_link/31')
assert r.data.decode() == ''


if __name__ == '__main__':
unittest.main()