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Issues list

Regression: Brain mask and brain tissue segmentation of the T1w worsened from 20.1.3 to 20.2.0-LTS effort:high Estimated high effort task impact:medium Estimated medium impact task mp2rage problems derived from multi-echo T1w images skull-stripping Brain extraction problems
#230 opened Oct 27, 2020 by mathias-sm
9
Skull-stripping failure on Quickshear-defaced images? bug Something isn't working effort:medium Estimated medium effort task impact:medium Estimated medium impact task skull-stripping Brain extraction problems
#229 opened Sep 24, 2020 by effigies
@oesteban
5
Calculate Euler numbers and place them in the sidecar json of surfaces. effort:low Estimated low effort task enhancement New feature or request impact:medium Estimated medium impact task
#152 opened Dec 19, 2019 by oesteban 0.7.0
1
7
Replace FSL FAST with ANTs-Atropos for brain tissue segmentation bug Something isn't working effort:low Estimated low effort task impact:medium Estimated medium impact task
#109 opened Sep 13, 2019 by effigies 0.8.0
4
Derivatives: metadata of transforms BIDS blocked effort:high Estimated high effort task impact:medium Estimated medium impact task
#61 opened Mar 14, 2019 by oesteban
1 task
0.8.0
Option to run FreeSurfer in working directory instead of output effort:high Estimated high effort task freesurfer FreeSurfer related improvements and issues impact:medium Estimated medium impact task
#44 opened Jan 15, 2019 by effigies 0.8.0
4
Compulsory merger of multiple anat? effort:high Estimated high effort task freesurfer FreeSurfer related improvements and issues impact:medium Estimated medium impact task multiple images Multiple T1w or T2w images (e.g., longitudinal, multisession, etc)
#31 opened Sep 25, 2018 by andersonwinkler
5
Adding --fs-expert-file flag in the recon-all process effort:high Estimated high effort task freesurfer FreeSurfer related improvements and issues impact:medium Estimated medium impact task
#32 opened Sep 21, 2018 by mattvan83
1
In case T2w is not present generate it from T1w effort:high Estimated high effort task impact:medium Estimated medium impact task
#34 opened Sep 8, 2018 by chrisgorgo
1
Apply lesion masks in skull stripping workflow effort:low Estimated low effort task impact:medium Estimated medium impact task skull-stripping Brain extraction problems
#40 opened May 4, 2018 by effigies
Add --lesion-mask-ds option to explicitly trigger masking updates effort:medium Estimated medium effort task impact:medium Estimated medium impact task skull-stripping Brain extraction problems
#42 opened May 4, 2018 by effigies
1
Wrong T1w mask used for EPI-T1 registration? effort:high Estimated high effort task impact:medium Estimated medium impact task mp2rage problems derived from multi-echo T1w images skull-stripping Brain extraction problems
#35 opened Mar 3, 2018 by chrisgorgo
2
Add visualizations of surface coregistration (to fsaverage) effort:medium Estimated medium effort task freesurfer FreeSurfer related improvements and issues impact:medium Estimated medium impact task
#20 opened Feb 13, 2018 by chrisgorgo 0.8.0
3
MP2RAGE skull-stripping effort:high Estimated high effort task impact:medium Estimated medium impact task mp2rage problems derived from multi-echo T1w images skull-stripping Brain extraction problems
#18 opened Dec 30, 2017 by oesteban 0.8.0
14
Surface reconstruction failure effort:medium Estimated medium effort task freesurfer FreeSurfer related improvements and issues impact:medium Estimated medium impact task
#19 opened Dec 19, 2017 by chrisgorgo
2
Non-visual QA effort:high Estimated high effort task freesurfer FreeSurfer related improvements and issues impact:medium Estimated medium impact task
#14 opened Oct 25, 2017 by oesteban 0.8.0
Quality control for FreeSurfer ROIs (parcellations) effort:medium Estimated medium effort task freesurfer FreeSurfer related improvements and issues impact:medium Estimated medium impact task
#10 opened Jan 13, 2017 by effigies 0.8.0
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