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0.8.0

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Last updated Oct 23, 2023
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0 issues of 17 selected

  • freesurfer crash because cannot create symbolic links in CIFS

    bugSomething isn't working
    effort:mediumEstimated medium effort task
    freesurferFreeSurfer related improvements and issues
    impact:lowEstimated low impact task
    Status: Open.
    #30 In nipreps/smriprep;
    · danielkimmel opened on Jul 23, 2018

  • Poor T1 MNI normalization

    bugSomething isn't working
    effort:mediumEstimated medium effort task
    impact:lowEstimated low impact task
    Status: Open.
    #55 In nipreps/smriprep;
    · oliver-xie opened on Feb 20, 2019

  • Replace FSL FAST with ANTs-Atropos for brain tissue segmentation

    bugSomething isn't working
    effort:lowEstimated low effort task
    impact:mediumEstimated medium impact task
    Status: Open.
    #109 In nipreps/smriprep;
    · effigies opened on Sep 13, 2019

  • FreeSurfer synchronization error

    bugSomething isn't working
    effort:highEstimated high effort task
    freesurferFreeSurfer related improvements and issues
    impact:lowEstimated low impact task
    Status: Open.
    #126 In nipreps/smriprep;
    · oesteban opened on Oct 17, 2019

  • Misalignment of brain tissue segmentation of the T1w

    Status: Open.
    #127 In nipreps/smriprep;
    · angelw55 opened on Sep 12, 2019

  • Inconsistent freesurfer outputs

    Status: Open.
    #128 In nipreps/smriprep;
    · araikes opened on Jul 21, 2019

  • autorecon3 issue

    Status: Open.
    #129 In nipreps/smriprep;
    · fliem opened on Jul 15, 2019

  • Incosistent autorecon errors

    bugSomething isn't working
    effort:mediumEstimated medium effort task
    freesurferFreeSurfer related improvements and issues
    impact:highEstimated high impact task
    Status: Open.
    #130 In nipreps/smriprep;
    · JoffJones opened on Oct 9, 2019

  • Missing file from FreeSurfer - synchronization issue too?

    Status: Open.
    #132 In nipreps/smriprep;
    · oesteban opened on Oct 21, 2019

  • Quality control for FreeSurfer ROIs (parcellations)

    effort:mediumEstimated medium effort task
    freesurferFreeSurfer related improvements and issues
    impact:mediumEstimated medium impact task
    Status: Open.
    #10 In nipreps/smriprep;
    · effigies opened on Jan 13, 2017

  • Non-visual QA

    effort:highEstimated high effort task
    freesurferFreeSurfer related improvements and issues
    impact:mediumEstimated medium impact task
    Status: Open.
    #14 In nipreps/smriprep;
    · oesteban opened on Oct 25, 2017

  • MP2RAGE skull-stripping

    effort:highEstimated high effort task
    impact:mediumEstimated medium impact task
    mp2rageproblems derived from multi-echo T1w images
    skull-strippingBrain extraction problems
    Status: Open.
    #18 In nipreps/smriprep;
    · oesteban opened on Dec 30, 2017

  • FLAIR in BIDS input data not used for Freesurfer surface <code>recon-all</code>

    bugSomething isn't working
    effort:mediumEstimated medium effort task
    freesurferFreeSurfer related improvements and issues
    impact:lowEstimated low impact task
    Status: Open.
    #33 In nipreps/smriprep;
    · oesteban opened on Sep 12, 2018

  • Option to run FreeSurfer in working directory instead of output

    effort:highEstimated high effort task
    freesurferFreeSurfer related improvements and issues
    impact:mediumEstimated medium impact task
    Status: Open.
    #44 In nipreps/smriprep;
    · effigies opened on Jan 15, 2019

  • Add visualizations of surface coregistration (to fsaverage)

    effort:mediumEstimated medium effort task
    freesurferFreeSurfer related improvements and issues
    impact:mediumEstimated medium impact task
    Status: Open.
    #20 In nipreps/smriprep;
    · chrisgorgo opened on Feb 13, 2018

  • Derivatives: metadata of transforms

    BIDS
    blocked
    effort:highEstimated high effort task
    impact:mediumEstimated medium impact task
    Status: Open.
    #61 In nipreps/smriprep;
    · oesteban opened on Mar 14, 2019

  • Merge multiple T2w images?

    effort:mediumEstimated medium effort task
    impact:lowEstimated low impact task
    multiple imagesMultiple T1w or T2w images (e.g., longitudinal, multisession, etc)
    Status: Open.
    #13 In nipreps/smriprep;
    · effigies opened on Sep 26, 2017
    •