Search results

dMRIprep 0.5.0: No folder output dir of dwi created

Status: Open.

#115 In nipy/dmriprep;

· nabaruns opened on Apr 26, 2021

5 comments

Use get_bval and get_bvec to get bval/bvec files

Status: Open.

#101 In nipy/dmriprep;

· arokem opened on Jul 9, 2019



Doesn't work with no field maps

Status: Open.

#98 In nipy/dmriprep;

· arokem opened on Jun 28, 2019

Replace Freesurfer registration with DIPY-based registration

Status: Open.

#84 In nipy/dmriprep;

· arokem opened on Apr 22, 2019

Two phase encode directions, but no field maps

Status: Open.

#83 In nipy/dmriprep;

· arokem opened on Apr 19, 2019

Handle cases where field-map is collected with a different resolution than the dwi

Status: Open.

#82 In nipy/dmriprep;

· arokem opened on Apr 19, 2019

1 comment

Handle multiple runs in the same session

Status: Open.

#81 In nipy/dmriprep;

· arokem opened on Apr 18, 2019

Add a docker entry point

Status: Open.

#73 In nipy/dmriprep;

· arokem opened on Mar 25, 2019

End-to-end testing

Status: Open.

#71 In nipy/dmriprep;

· arokem opened on Mar 25, 2019

make a CLI that would run docker with the dependencies in it

Status: Open.

#70 In nipy/dmriprep;

· arokem opened on Mar 25, 2019

1 comment



Longitudinal pipeline

Status: Open.

#68 In nipy/dmriprep;

· araikes opened on Mar 13, 2019

regenerate neurodocker docker file with min version of Freesurfer

Status: Open.

#66 In nipy/dmriprep;

· akeshavan opened on Mar 8, 2019

For data.Study object, maybe the s3_prefix input should default to None?

Status: Open.

#63 In nipy/dmriprep;

· arokem opened on Feb 25, 2019

ENH: Optional preprocessing steps for denoising, unringing and upsampling

Status: Open.

#62 In nipy/dmriprep;

· josephmje opened on Feb 21, 2019

3 comments

Cloudknot Freesurfer

Status: Open.

#59 In nipy/dmriprep;

· arokem opened on Feb 5, 2019

ENH: Two pipelines

Status: Open.

#58 In nipy/dmriprep;

· richford opened on Feb 4, 2019

4 comments

nibabel get_data vs get_fdata

Status: Open.

#55 In nipy/dmriprep;

· akeshavan opened on Dec 18, 2018

5 comments

add another postprocessing step to HBN study data -- rename AP/PA fmaps

Status: Open.

#54 In nipy/dmriprep;

· akeshavan opened on Dec 18, 2018



Create a hash of subject's files after downloading

Status: Open.

#47 In nipy/dmriprep;

· richford opened on Dec 11, 2018



write a nipype interface for eddy_qc

Status: Open.

#46 In nipy/dmriprep;

· akeshavan opened on Dec 11, 2018

 ·  

OHBM



Write Tests

Status: Open.

#45 In nipy/dmriprep;

· richford opened on Dec 11, 2018

 ·  

OHBM



prepare datasets for all use cases

Status: Open.

#30 In nipy/dmriprep;

· akeshavan opened on Dec 5, 2018

1 comment



no topup for when there is only one phase encode

Status: Open.

#29 In nipy/dmriprep;

· jyeatman opened on Dec 5, 2018

does the target for dmriprep allow things like brainstem and spinal cord scans?

Status: Open.

#24 In nipy/dmriprep;

· satra opened on Dec 4, 2018

1 comment

Manuscript

Status: Open.

#22 In nipy/dmriprep;

· jyeatman opened on Nov 28, 2018