BF: allow for BrainModels or Parcels to contain a single vertex #739
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…ertex Fixes an edge case in the reading of CIFTI files. Tests for this edge case have been added for both the BrainModel and Parcel axes.
2 similar comments
effigies
reviewed
Mar 12, 2019
nibabel/cifti2/parse_cifti2.py
Outdated
| @@ -517,7 +517,7 @@ def flush_chardata(self): | |||
| # conversion to numpy array | |||
| c = BytesIO(data.strip().encode('utf-8')) | |||
| vertices = self.struct_state[-1] | |||
| vertices.extend(np.loadtxt(c, dtype=np.int)) | |||
| vertices.extend(np.atleast_1d(np.loadtxt(c, dtype=np.int))) | |||
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Suggested change
| vertices.extend(np.atleast_1d(np.loadtxt(c, dtype=np.int))) | |
| vertices.extend(np.loadtxt(c, dtype=np.int, ndmin=1)) |
nibabel/cifti2/parse_cifti2.py
Outdated
| @@ -531,7 +531,7 @@ def flush_chardata(self): | |||
| # conversion to numpy array | |||
| c = BytesIO(data.strip().encode('utf-8')) | |||
| index = self.struct_state[-1] | |||
| index.extend(np.loadtxt(c, dtype=np.int)) | |||
| index.extend(np.atleast_1d(np.loadtxt(c, dtype=np.int))) | |||
There was a problem hiding this comment.
Suggested change
| index.extend(np.atleast_1d(np.loadtxt(c, dtype=np.int))) | |
| index.extend(np.loadtxt(c, dtype=np.int, ndmin=1)) |
Codecov Report
@@ Coverage Diff @@
## master #739 +/- ##
=======================================
Coverage 89.39% 89.39%
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Files 93 93
Lines 11476 11476
Branches 1992 1992
=======================================
Hits 10259 10259
Misses 881 881
Partials 336 336
Continue to review full report at Codecov.
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Well spotted, that indeed has the same effect (sorry, I only noticed that I could simply have accepted your suggested changes after pushing a commit based on your update) |
|
LGTM. Thanks. |
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Fixes an edge case in the reading of CIFTI files.
Tests for this edge case have been added for both the BrainModel and Parcel axes.