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18 Commits

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Name		Name	Last commit message	Last commit date
beef_maplet		beef_maplet
shiny_reference		shiny_reference
.DS_Store		.DS_Store
.gitignore		.gitignore
5023_Fat-FIA_nonorm_microM.xlsx		5023_Fat-FIA_nonorm_microM.xlsx
5023_Fat-LC_nonorm_microM.xlsx		5023_Fat-LC_nonorm_microM.xlsx
5023_Liver-FIA_nonorm_microM.xlsx		5023_Liver-FIA_nonorm_microM.xlsx
5023_Liver-LC_nonorm_microM.xlsx		5023_Liver-LC_nonorm_microM.xlsx
5023_Muscle-FIA_nonorm_microM.xlsx		5023_Muscle-FIA_nonorm_microM.xlsx
5023_Muscle-LC_nonorm_microM.xlsx		5023_Muscle-LC_nonorm_microM.xlsx
BufferAnalysis.xlsx		BufferAnalysis.xlsx
Dockerfile.txt		Dockerfile.txt
Example_Pipeline_Pathway_Analysis.html		Example_Pipeline_Pathway_Analysis.html
HMDB database query.docx		HMDB database query.docx
HeprineCitrate.R		HeprineCitrate.R
HeprineCitrate.xlsx		HeprineCitrate.xlsx
HeprineCitrate2.xls		HeprineCitrate2.xls
Heprine_Citrate_Sub.xlsx		Heprine_Citrate_Sub.xlsx
KeggPathways.Rds		KeggPathways.Rds
MetaboliteMapping.Rds		MetaboliteMapping.Rds
PreprocessedData.xlsx		PreprocessedData.xlsx
Rplot.pdf		Rplot.pdf
Shiny_reference.Rmd		Shiny_reference.Rmd
Shiny_reference.nb.html		Shiny_reference.nb.html
TissueAnalysis.xlsx		TissueAnalysis.xlsx
accession.txt		accession.txt
anno_biocrates.xls		anno_biocrates.xls
beef_metabolomics_maplet.R		beef_metabolomics_maplet.R
beef_metabolomics_maplet_auto.R		beef_metabolomics_maplet_auto.R
beef_metabolomics_maplet_auto_working.R		beef_metabolomics_maplet_auto_working.R
beef_metabolomics_maplet_example_pipeline.R		beef_metabolomics_maplet_example_pipeline.R
beef_metabolomics_maplet_fun.R		beef_metabolomics_maplet_fun.R
beef_metabolomics_maplet_nov2021.R		beef_metabolomics_maplet_nov2021.R
beef_metabolomics_maplet_v1_cmerge_buffer_removed.log		beef_metabolomics_maplet_v1_cmerge_buffer_removed.log
beef_metabolomics_maplet_v1_cmerge_buffer_removed.maplet.html		beef_metabolomics_maplet_v1_cmerge_buffer_removed.maplet.html
beef_metabolomics_v3.R		beef_metabolomics_v3.R
beef_metabolomics_v3_cmerge_incl_buffer.preprocessed.xlsx		beef_metabolomics_v3_cmerge_incl_buffer.preprocessed.xlsx
bt_biocrates_load_preprocess.R		bt_biocrates_load_preprocess.R
direct_parent.txt		direct_parent.txt
filename.txt		filename.txt
git_project.Rproj		git_project.Rproj
install.sh		install.sh
maplet-setup.docx		maplet-setup.docx
merge_SE.R		merge_SE.R
meta_name.txt		meta_name.txt
mt_biocrates_anno_pathways_xls.R		mt_biocrates_anno_pathways_xls.R
mt_read_biocrates.R		mt_read_biocrates.R
mt_read_biocrates_old.R		mt_read_biocrates_old.R
mt_remove_buffer.R		mt_remove_buffer.R
mt_stats_univ_lm_temp.R		mt_stats_univ_lm_temp.R
mt_stats_univ_wilcox_temp.R		mt_stats_univ_wilcox_temp.R
mt_test.R		mt_test.R
mti_format_se_samplewise_temp.R		mti_format_se_samplewise_temp.R
process_xml.sh		process_xml.sh
read_beef_data.R		read_beef_data.R
results.xlsx		results.xlsx
results1.xlsx		results1.xlsx
results2.xlsx		results2.xlsx
server.R		server.R
test		test
test2.R		test2.R
test_xml.sh		test_xml.sh
tmp_0b6c1d52-771f-433b-9d1e-77162600e008.RMD		tmp_0b6c1d52-771f-433b-9d1e-77162600e008.RMD
tmp_364b8098-7ccb-44c0-92f6-a666bf700f30.RMD		tmp_364b8098-7ccb-44c0-92f6-a666bf700f30.RMD
tmp_aa288e77-f140-4284-981e-667520ec0f4f.RMD		tmp_aa288e77-f140-4284-981e-667520ec0f4f.RMD
tmp_c6b9d69e-76d9-490f-aac7-434db7d15e61.RMD		tmp_c6b9d69e-76d9-490f-aac7-434db7d15e61.RMD
token.txt		token.txt
ui.R		ui.R
~$HeprineCitrate.xlsx		~$HeprineCitrate.xlsx
~$Heprine_Citrate_Sub.xlsx		~$Heprine_Citrate_Sub.xlsx
~$plet-setup.docx		~$plet-setup.docx
~WRL0005.tmp		~WRL0005.tmp
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