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Merged
nomadscientist merged 29 commits into from
Mar 27, 2025
Merged

Put Alevin tutorials together #30

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7794a5c
change text
nomadscientist Mar 20, 2025
803b7a4
fix GTF mapping
nomadscientist Mar 20, 2025
81ff8e7
add gap
nomadscientist Mar 20, 2025
5c33711
update text
nomadscientist Mar 20, 2025
1b26fe3
improve transformation section
nomadscientist Mar 20, 2025
3f73187
improve text
nomadscientist Mar 20, 2025
3c21926
update ending
nomadscientist Mar 20, 2025
ad26fbf
improve ending and metadata
nomadscientist Mar 20, 2025
d30d360
add answer key history link
nomadscientist Mar 20, 2025
f0081be
fix issue
nomadscientist Mar 20, 2025
1fcd904
add missing step
nomadscientist Mar 20, 2025
5c7c84a
update text
nomadscientist Mar 20, 2025
ab0050a
add scanpy cyoa
nomadscientist Mar 20, 2025
69fd813
adjust text
nomadscientist Mar 20, 2025
878db4c
minor changes
nomadscientist Mar 20, 2025
5fd8573
organise images
nomadscientist Mar 20, 2025
67259dd
update images
nomadscientist Mar 20, 2025
d58c57e
test workflows link
nomadscientist Mar 20, 2025
facb818
workflows link
nomadscientist Mar 20, 2025
f72da1d
remove unneeded reference
nomadscientist Mar 22, 2025
3b014b5
move history into metadata to make updating easier
nomadscientist Mar 22, 2025
ea903a3
add overview image
nomadscientist Mar 23, 2025
5f17a34
update histories
nomadscientist Mar 23, 2025
bffecea
update es file
nomadscientist Mar 23, 2025
b5f77e8
Merge branch 'main' into alevin_og_update_mito
nomadscientist Mar 23, 2025
6a784f7
Merge branch 'main' into alevin_og_update_mito
nomadscientist Mar 26, 2025
3cfb4f8
update workflow
nomadscientist Mar 26, 2025
89e7d3c
put back old workflow
nomadscientist Mar 27, 2025
a12b990
remove es tutorial
nomadscientist Mar 27, 2025
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817 changes: 2 additions & 815 deletions topics/single-cell/tutorials/scrna-case_alevin-combine-datasets/tutorial_ES.md
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445 changes: 269 additions & 176 deletions topics/single-cell/tutorials/scrna-case_alevin/tutorial.md
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814 changes: 2 additions & 812 deletions topics/single-cell/tutorials/scrna-case_alevin/tutorial_ES.md
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1,070 changes: 1,070 additions & 0 deletions ...ell/tutorials/scrna-case_alevin/workflows/Generating_a_single_cell_matrix_using_Alevin.ga
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