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HiC Pro bowtie2-align exited with value 1

Status: Open.

#688 In nservant/HiC-Pro;

· FenggChengg opened on Nov 11, 2025

Wrong parameter name on manual

Status: Open.

#687 In nservant/HiC-Pro;

· Yoonsung1203 opened on Oct 31, 2025

For Omni-C data processing

Status: Open.

#686 In nservant/HiC-Pro;

· normal-154 opened on Sep 8, 2025

HiC-Pro_3.1.0/scripts/ice:65: SyntaxWarning: "is" with a literal. Did you mean "=="?

Status: Open.

#684 In nservant/HiC-Pro;

· HengkuanLi opened on May 17, 2025

Exit: Error in reads alignment - Exit

Status: Open.

#683 In nservant/HiC-Pro;

· lscnsdad opened on Apr 29, 2025

Test data run fails under SLURM configuration but succeeds with TORQUE settings

Status: Open.

#682 In nservant/HiC-Pro;

· h20gg702 opened on Apr 19, 2025

test data with Forward and reverse reads not paired. Check that BAM files have the same read names and are sorted.

Status: Open.

#681 In nservant/HiC-Pro;

· h20gg702 opened on Apr 14, 2025

Converting Juicer Output to HiC-Pro Format for CentIER

Status: Open.

#680 In nservant/HiC-Pro;

· DayTimeMouse opened on Apr 2, 2025

error in bowtie pairing, large input data

Status: Open.

#679 In nservant/HiC-Pro;

· zihaozhu92 opened on Mar 26, 2025

Link to Singularity container

Status: Open.

#677 In nservant/HiC-Pro;

· malonzm1 opened on Mar 18, 2025

Ligation site for DpnII and DdeI and example config file

Status: Open.

#675 In nservant/HiC-Pro;

· ahmedabbas811 opened on Mar 16, 2025

The bed file is always one line less than the biases file.

Status: Open.

#674 In nservant/HiC-Pro;

· oganesson76 opened on Mar 9, 2025