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Merged
kodiakhq merged 1 commit into from
Feb 1, 2026
Merged

Julia Dependency Update #147

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66 changes: 34 additions & 32 deletions Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -460,9 +460,9 @@ version = "1.15.1"

[[deps.DifferentiationInterface]]
deps = ["ADTypes", "LinearAlgebra"]
git-tree-sha1 = "44d9321761ed99e1d444b5081b3166d3259adcf0"
git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce"
uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
version = "0.7.14"
version = "0.7.16"

[deps.DifferentiationInterface.extensions]
DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -510,9 +510,9 @@ version = "0.7.14"

[[deps.DispatchDoctor]]
deps = ["MacroTools", "Preferences"]
git-tree-sha1 = "fc5e4798a96c4a7ffa2991bb5b372262578587a9"
git-tree-sha1 = "42cd00edaac86f941815fe557c1d01e11913e07c"
uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8"
version = "0.4.27"
version = "0.4.28"
weakdeps = ["ChainRulesCore", "EnzymeCore"]

[deps.DispatchDoctor.extensions]
Expand Down Expand Up @@ -671,9 +671,9 @@ uuid = "442a2c76-b920-505d-bb47-c5924d526838"
version = "1.1.0"

[[deps.FastPower]]
git-tree-sha1 = "1dd291358e0e3a31f77dbbb76ce7abbcca38d410"
git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71"
uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b"
version = "1.3.0"
version = "1.3.1"

[deps.FastPower.extensions]
FastPowerEnzymeExt = "Enzyme"
Expand Down Expand Up @@ -723,9 +723,9 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"]

[[deps.FindFirstFunctions]]
deps = ["PrecompileTools"]
git-tree-sha1 = "1960e97427e0c1e66b603f4d047e6367a70c5d9e"
git-tree-sha1 = "27b495de668ccea58de6b06d6d13181396598ea0"
uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224"
version = "1.7.0"
version = "1.8.0"

[[deps.FiniteDiff]]
deps = ["ArrayInterface", "LinearAlgebra", "Setfield"]
Expand Down Expand Up @@ -764,9 +764,9 @@ version = "1.3.7"

[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"]
git-tree-sha1 = "b2977f86ed76484de6f29d5b36f2fa686f085487"
git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "1.3.1"
version = "1.3.2"
weakdeps = ["StaticArrays"]

[deps.ForwardDiff.extensions]
Expand Down Expand Up @@ -814,9 +814,9 @@ version = "0.2.0"

[[deps.GR]]
deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"]
git-tree-sha1 = "f2fd0ae89599c11473fbd846ea1b9ed8c24613fb"
git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c"
uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
version = "0.73.21"
version = "0.73.22"

[deps.GR.extensions]
IJuliaExt = "IJulia"
Expand All @@ -826,9 +826,9 @@ version = "0.73.21"

[[deps.GR_jll]]
deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "55965bc822094d9e5d314d2845fb77f1b74fc8f7"
git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659"
uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
version = "0.73.21+0"
version = "0.73.22+0"

[[deps.GenericSchur]]
deps = ["LinearAlgebra", "Printf"]
Expand Down Expand Up @@ -867,9 +867,9 @@ version = "1.3.15+0"

[[deps.Graphs]]
deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"]
git-tree-sha1 = "cbf93df308fe790f9068b7e177e8baa2f46b86c9"
git-tree-sha1 = "031d63d09bd3e6e319df66bb466f5c3e8d147bee"
uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
version = "1.13.3"
version = "1.13.4"

[deps.Graphs.extensions]
GraphsSharedArraysExt = "SharedArrays"
Expand Down Expand Up @@ -1026,9 +1026,9 @@ version = "3.1.4+0"

[[deps.JuliaFormatter]]
deps = ["CommonMark", "Glob", "JuliaSyntax", "PrecompileTools", "TOML"]
git-tree-sha1 = "ca9470360f51697fc1bde747760b2d99936619ea"
git-tree-sha1 = "eeb150b63d8bfdca04a0c367a8b95d3863fdc892"
uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
version = "2.2.0"
version = "2.2.1"

[[deps.JuliaSyntax]]
git-tree-sha1 = "937da4713526b96ac9a178e2035019d3b78ead4a"
Expand All @@ -1042,9 +1042,9 @@ version = "1.12.0"

[[deps.JumpProcesses]]
deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface"]
git-tree-sha1 = "0593944281222db3b3f3bc1cfe2c464a17f9eea1"
git-tree-sha1 = "c19bb0be5fe979b4476ab5531393b4fb0752ace5"
uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5"
version = "9.21.0"
version = "9.21.1"

[deps.JumpProcesses.extensions]
JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"]
Expand Down Expand Up @@ -1362,9 +1362,9 @@ version = "1.11.0"

[[deps.ModelingToolkit]]
deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BlockArrays", "ChainRulesCore", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "DifferentiationInterface", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"]
git-tree-sha1 = "2d47e71d1b12451865a310731bb12a5afd4ed2e4"
git-tree-sha1 = "a02334b93bc8f13487b1070cb197be20edf7ef29"
uuid = "961ee093-0014-501f-94e3-6117800e7a78"
version = "10.31.2"
version = "10.32.0"

[deps.ModelingToolkit.extensions]
MTKBifurcationKitExt = "BifurcationKit"
Expand Down Expand Up @@ -1577,9 +1577,9 @@ version = "1.8.1"

[[deps.OrdinaryDiffEq]]
deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
git-tree-sha1 = "dc70b19f140e9cbd02864c96ccfc833cbc6b8dd7"
git-tree-sha1 = "3d7817c992df89788f770d856f96a1206cbcaa91"
uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
version = "6.106.0"
version = "6.107.0"

[[deps.OrdinaryDiffEqAdamsBashforthMoulton]]
deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"]
Expand All @@ -1595,17 +1595,19 @@ version = "1.14.0"

[[deps.OrdinaryDiffEqCore]]
deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"]
git-tree-sha1 = "862b950dd2a4d406b6e9cbb71f6e3b2043647665"
git-tree-sha1 = "07a5e3a5fbc3b17db2adc2dd67fd10b9ce83efb2"
uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8"
version = "3.2.0"
version = "3.3.0"

[deps.OrdinaryDiffEqCore.extensions]
OrdinaryDiffEqCoreEnzymeCoreExt = "EnzymeCore"
OrdinaryDiffEqCoreMooncakeExt = "Mooncake"
OrdinaryDiffEqCoreSparseArraysExt = "SparseArrays"

[deps.OrdinaryDiffEqCore.weakdeps]
EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6"
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[deps.OrdinaryDiffEqDefault]]
deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"]
Expand Down Expand Up @@ -1993,9 +1995,9 @@ version = "0.6.12"

[[deps.RecursiveArrayTools]]
deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"]
git-tree-sha1 = "d8fbab1e8a272cc8e73fc24515075e48e6f77034"
git-tree-sha1 = "81750fa442cc5cb3ab1ba89b1cdf8eda543e6905"
uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
version = "3.45.1"
version = "3.47.0"

[deps.RecursiveArrayTools.extensions]
RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
Expand Down Expand Up @@ -2087,9 +2089,9 @@ version = "0.1.0"

[[deps.SciMLBase]]
deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
git-tree-sha1 = "9923adc7defeba6a52a99eb493ec317ac6c65942"
git-tree-sha1 = "1b007ef25d4c18da29f956c2cad0a45f1c98f0f3"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.134.0"
version = "2.136.0"

[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -2545,9 +2547,9 @@ version = "0.4.1"

[[deps.Unitful]]
deps = ["Dates", "LinearAlgebra", "Random"]
git-tree-sha1 = "c25751629f5baaa27fef307f96536db62e1d754e"
git-tree-sha1 = "57e1b2c9de4bd6f40ecb9de4ac1797b81970d008"
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
version = "1.27.0"
version = "1.28.0"
weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "LaTeXStrings", "Latexify", "NaNMath", "Printf"]

[deps.Unitful.extensions]
Expand Down