Refresh imports 20260317

[RiveraAndrea83]

-refreshed imports.

[gouttegd]

The CI check seems to be due to

(1) GO having obsoleted 'detection of electrical stimulus involved in electroreception' (geneontology/go-ontology#31306);

(2) Uberon using that term in its definition of 'electroreceptor organ'.

This is primarily a Uberon problem, but it shows up here rather than in Uberon likely because Uberon has not yet refreshed its GO import since the obsoletion took place.

[gouttegd]

it shows up here rather than in Uberon likely because Uberon has not yet refreshed its GO import since the obsoletion took place.

Confirmed: Uberon last updated its import file on 12 January. GO obsoleted GO:0050964 on 9 January but the first GO release in which the obsoletion was visible was on 23 January.

[RiveraAndrea83]

Hi Damian, yes i have changed the usage of the obsolete term with an alternative. this comes up everytime i refresh the imports sadly.

[github-actions]

http://purl.obolibrary.org/obo/CL_0002042 in taxon http://purl.obolibrary.org/obo/NCBITaxon_9606 SubClassOf Nothing

• http://purl.obolibrary.org/obo/CL_0002042 in taxon http://purl.obolibrary.org/obo/NCBITaxon_9606 SubClassOf immature NK T cell stage IV, mouse
  • immature NK T cell stage IV, mouse EquivalentTo immature NK T cell and (lacks_plasma_membrane_part some KLRB1-like protein) and (has plasma membrane part some CD44 molecule) and (in taxon some Mus musculus) and (has high plasma membrane amount some integrin alpha-2) and (has low plasma membrane amount some signal transducer CD24)
    • Mus musculus SubClassOf Mus
      • Mus SubClassOf Mus
        • Mus SubClassOf Murinae
          • Murinae SubClassOf Muridae
            • Muridae SubClassOf Muroidea
              • Muroidea SubClassOf Myomorpha
                • Myomorpha SubClassOf Rodentia
                  • Rodentia SubClassOf Glires
• http://purl.obolibrary.org/obo/CL_0002042 in taxon http://purl.obolibrary.org/obo/NCBITaxon_9606 SubClassOf in taxon some Homo sapiens
  • Homo sapiens SubClassOf Homo
    • Homo SubClassOf Homininae
      • Homininae SubClassOf Hominidae
        • Hominidae SubClassOf Hominoidea
          • Hominoidea SubClassOf Catarrhini
            • Catarrhini SubClassOf Simiiformes
              • Simiiformes SubClassOf Haplorrhini
                • Haplorrhini SubClassOf Primates
• in taxon some Glires DisjointWith in taxon some Primates

Axiom Impact

Axioms used 1 times

• immature NK T cell stage IV, mouse EquivalentTo immature NK T cell and (lacks_plasma_membrane_part some KLRB1-like protein) and (has plasma membrane part some CD44 molecule) and (in taxon some Mus musculus) and (has high plasma membrane amount some integrin alpha-2) and (has low plasma membrane amount some signal transducer CD24) [cl.owl]
• Muridae SubClassOf Muroidea [cl.owl]
• Mus SubClassOf Murinae [cl.owl]
• Mus musculus SubClassOf Mus [cl.owl]
• Myomorpha SubClassOf Rodentia [cl.owl]
• Homininae SubClassOf Hominidae [cl.owl]
• Simiiformes SubClassOf Haplorrhini [cl.owl]
• Hominoidea SubClassOf Catarrhini [cl.owl]
• Muroidea SubClassOf Myomorpha [cl.owl]
• Haplorrhini SubClassOf Primates [cl.owl]
• Murinae SubClassOf Muridae [cl.owl]
• Mus SubClassOf Mus [cl.owl]
• Catarrhini SubClassOf Simiiformes [cl.owl]
• Hominidae SubClassOf Hominoidea [cl.owl]
• Homo SubClassOf Homininae [cl.owl]
• Homo sapiens SubClassOf Homo [cl.owl]
• Rodentia SubClassOf Glires [cl.owl]
• http://purl.obolibrary.org/obo/CL_0002042 in taxon http://purl.obolibrary.org/obo/NCBITaxon_9606 SubClassOf immature NK T cell stage IV, mouse [cl.owl]
• http://purl.obolibrary.org/obo/CL_0002042 in taxon http://purl.obolibrary.org/obo/NCBITaxon_9606 SubClassOf in taxon some Homo sapiens [cl.owl]
• in taxon some Glires DisjointWith in taxon some Primates [cl.owl]

Ontologies used:

• cl.owl (http://purl.obolibrary.org/obo/cl.owl)

[dosumis]

Frankly furious about the GO changes. FBbt very badly broken by them and they are dropping really important biological distinctions.

[gouttegd]

Frankly furious about the GO changes. FBbt very badly broken by them

Yeah, when I saw the list of obsoleted terms that was my first thought – “isn’t FBbt using a lot of those in its logical definitions?”

(I may no longer be working for FlyBase but FBbt is always in a corner of my mind. :D )