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Merged
RiveraAndrea83 merged 1 commit into from
Mar 17, 2026
Merged

release files 20260317 #3594

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5,703 changes: 4,000 additions & 1,703 deletions cl-base.owl
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7,673 changes: 2,615 additions & 5,058 deletions cl.obo
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9,717 changes: 8,814 additions & 903 deletions src/ontology/reports/cl-base-diff.md
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5 changes: 3 additions & 2 deletions src/ontology/reports/cl-edit.owl-obo-report.tsv
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Expand Up @@ -24,7 +24,6 @@ WARN duplicate_scoped_synonym CL:4023016 oboInOwl:hasRelatedSynonym VIP neuron
WARN missing_definition CL:0000028 IAO:0000115
WARN missing_definition CL:0000069 IAO:0000115
WARN missing_definition CL:0000072 IAO:0000115
WARN missing_definition CL:0000076 IAO:0000115
WARN missing_definition CL:0000095 IAO:0000115
WARN missing_definition CL:0000109 IAO:0000115
WARN missing_definition CL:0000117 IAO:0000115
Expand Down Expand Up @@ -140,6 +139,7 @@ INFO missing_superclass CL:0000036 rdfs:subClassOf
INFO missing_superclass CL:0000048 rdfs:subClassOf
INFO missing_superclass CL:0000064 rdfs:subClassOf
INFO missing_superclass CL:0000067 rdfs:subClassOf
INFO missing_superclass CL:0000076 rdfs:subClassOf
INFO missing_superclass CL:0000078 rdfs:subClassOf
INFO missing_superclass CL:0000080 rdfs:subClassOf
INFO missing_superclass CL:0000082 rdfs:subClassOf
Expand Down Expand Up @@ -173,6 +173,7 @@ INFO missing_superclass CL:0000225 rdfs:subClassOf
INFO missing_superclass CL:0000226 rdfs:subClassOf
INFO missing_superclass CL:0000227 rdfs:subClassOf
INFO missing_superclass CL:0000228 rdfs:subClassOf
INFO missing_superclass CL:0000240 rdfs:subClassOf
INFO missing_superclass CL:0000255 rdfs:subClassOf
INFO missing_superclass CL:0000295 rdfs:subClassOf
INFO missing_superclass CL:0000322 rdfs:subClassOf
Expand Down Expand Up @@ -431,6 +432,7 @@ INFO missing_superclass CL:0019026 rdfs:subClassOf
INFO missing_superclass CL:0019028 rdfs:subClassOf
INFO missing_superclass CL:0019029 rdfs:subClassOf
INFO missing_superclass CL:0020002 rdfs:subClassOf
INFO missing_superclass CL:0020005 rdfs:subClassOf
INFO missing_superclass CL:0020012 rdfs:subClassOf
INFO missing_superclass CL:1000001 rdfs:subClassOf
INFO missing_superclass CL:1000022 rdfs:subClassOf
Expand Down Expand Up @@ -618,7 +620,6 @@ INFO missing_superclass CL:4023049 rdfs:subClassOf
INFO missing_superclass CL:4023057 rdfs:subClassOf
INFO missing_superclass CL:4023058 rdfs:subClassOf
INFO missing_superclass CL:4023062 rdfs:subClassOf
INFO missing_superclass CL:4023063 rdfs:subClassOf
INFO missing_superclass CL:4023066 rdfs:subClassOf
INFO missing_superclass CL:4023068 rdfs:subClassOf
INFO missing_superclass CL:4023072 rdfs:subClassOf
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26,856 changes: 25,059 additions & 1,797 deletions src/ontology/reports/release-diff.md
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1,183 changes: 923 additions & 260 deletions src/ontology/reports/summary_release.md
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4,381 changes: 3,744 additions & 637 deletions src/ontology/subsets/blood_and_immune_upper_slim.json
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101 changes: 84 additions & 17 deletions src/ontology/subsets/blood_and_immune_upper_slim.obo
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778 changes: 551 additions & 227 deletions src/ontology/subsets/blood_and_immune_upper_slim.owl
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7 changes: 5 additions & 2 deletions src/ontology/subsets/blood_and_immune_upper_slim.tsv
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Expand Up @@ -598,9 +598,9 @@ http://purl.obolibrary.org/obo/GO_0097734 extracellular exosome biogenesis
http://purl.obolibrary.org/obo/GO_0098542 defense response to other organism
http://purl.obolibrary.org/obo/GO_0098590 plasma membrane region
http://purl.obolibrary.org/obo/GO_0098642 network-forming collagen trimer
http://purl.obolibrary.org/obo/GO_0098643 fibrillar collagen
http://purl.obolibrary.org/obo/GO_0098643 fibrillar collagen complex
http://purl.obolibrary.org/obo/GO_0098644 complex of collagen trimers
http://purl.obolibrary.org/obo/GO_0098645 collagen network
http://purl.obolibrary.org/obo/GO_0098645 complex of network-forming collagens
http://purl.obolibrary.org/obo/GO_0098657 import into cell
http://purl.obolibrary.org/obo/GO_0098793 presynapse
http://purl.obolibrary.org/obo/GO_0098794 postsynapse
Expand Down Expand Up @@ -658,6 +658,7 @@ http://purl.obolibrary.org/obo/NCBITaxon_147554 Schizosaccharomycetes
http://purl.obolibrary.org/obo/NCBITaxon_1963758 Myomorpha
http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria
http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota
http://purl.obolibrary.org/obo/NCBITaxon_28009 Choanoflagellata
http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires
http://purl.obolibrary.org/obo/NCBITaxon_314147 Glires
http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda
Expand Down Expand Up @@ -711,6 +712,7 @@ http://purl.obolibrary.org/obo/PATO_0001407 mononucleate
http://purl.obolibrary.org/obo/PATO_0001501 immature
http://purl.obolibrary.org/obo/PATO_0001548 quality of a liquid
http://purl.obolibrary.org/obo/PATO_0001579 contractility
http://purl.obolibrary.org/obo/PATO_0001591 curvature
http://purl.obolibrary.org/obo/PATO_0001690 contractile
http://purl.obolibrary.org/obo/PATO_0001857 concave
http://purl.obolibrary.org/obo/PATO_0001873 cylindrical
Expand All @@ -729,6 +731,7 @@ http://purl.obolibrary.org/obo/PATO_0002045 dendritic
http://purl.obolibrary.org/obo/PATO_0002078 hollow
http://purl.obolibrary.org/obo/PATO_0002094 basophilic
http://purl.obolibrary.org/obo/PATO_0002198 quality of a substance
http://purl.obolibrary.org/obo/PATO_0002254 flattened
http://purl.obolibrary.org/obo/PATO_0002266 3-D shape
http://purl.obolibrary.org/obo/PATO_0002299 tubular
http://purl.obolibrary.org/obo/PATO_0002318 superelliptic
Expand Down
5,494 changes: 4,755 additions & 739 deletions src/ontology/subsets/eye_upper_slim.json
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206 changes: 188 additions & 18 deletions src/ontology/subsets/eye_upper_slim.obo
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1,699 changes: 1,214 additions & 485 deletions src/ontology/subsets/eye_upper_slim.owl
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19 changes: 17 additions & 2 deletions src/ontology/subsets/eye_upper_slim.tsv
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Expand Up @@ -424,9 +424,9 @@ http://purl.obolibrary.org/obo/GO_0097708 intracellular vesicle
http://purl.obolibrary.org/obo/GO_0097734 extracellular exosome biogenesis
http://purl.obolibrary.org/obo/GO_0098590 plasma membrane region
http://purl.obolibrary.org/obo/GO_0098642 network-forming collagen trimer
http://purl.obolibrary.org/obo/GO_0098643 fibrillar collagen
http://purl.obolibrary.org/obo/GO_0098643 fibrillar collagen complex
http://purl.obolibrary.org/obo/GO_0098644 complex of collagen trimers
http://purl.obolibrary.org/obo/GO_0098645 collagen network
http://purl.obolibrary.org/obo/GO_0098645 complex of network-forming collagens
http://purl.obolibrary.org/obo/GO_0098793 presynapse
http://purl.obolibrary.org/obo/GO_0098794 postsynapse
http://purl.obolibrary.org/obo/GO_0098916 anterograde trans-synaptic signaling
Expand All @@ -449,6 +449,7 @@ http://purl.obolibrary.org/obo/GO_0140101 catalytic activity, acting on a tRNA
http://purl.obolibrary.org/obo/GO_0140112 extracellular vesicle biogenesis
http://purl.obolibrary.org/obo/GO_0140139 solid phase of basement membrane
http://purl.obolibrary.org/obo/GO_0140143 collagenous component of basement membrane
http://purl.obolibrary.org/obo/GO_0140149 non-collagenous component of interstitial matrix
http://purl.obolibrary.org/obo/GO_0140151 solid phase of interstitial matrix
http://purl.obolibrary.org/obo/GO_0140152 collagenous component of interstitial matrix
http://purl.obolibrary.org/obo/GO_0140154 chicken-wire-like collagen network
Expand All @@ -465,13 +466,18 @@ http://purl.obolibrary.org/obo/NCBITaxon_10088 Mus <genus>
http://purl.obolibrary.org/obo/NCBITaxon_10090 Mus musculus
http://purl.obolibrary.org/obo/NCBITaxon_117570 Teleostomi
http://purl.obolibrary.org/obo/NCBITaxon_117571 Euteleostomi
http://purl.obolibrary.org/obo/NCBITaxon_119089 Chromadorea
http://purl.obolibrary.org/obo/NCBITaxon_1206794 Ecdysozoa
http://purl.obolibrary.org/obo/NCBITaxon_131567 cellular organisms
http://purl.obolibrary.org/obo/NCBITaxon_1338369 Dipnotetrapodomorpha
http://purl.obolibrary.org/obo/NCBITaxon_1437010 Boreoeutheria
http://purl.obolibrary.org/obo/NCBITaxon_147554 Schizosaccharomycetes
http://purl.obolibrary.org/obo/NCBITaxon_1963758 Myomorpha
http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria
http://purl.obolibrary.org/obo/NCBITaxon_2301116 Rhabditina
http://purl.obolibrary.org/obo/NCBITaxon_2301119 Rhabditomorpha
http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota
http://purl.obolibrary.org/obo/NCBITaxon_28009 Choanoflagellata
http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires
http://purl.obolibrary.org/obo/NCBITaxon_314147 Glires
http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda
Expand All @@ -480,6 +486,7 @@ http://purl.obolibrary.org/obo/NCBITaxon_32525 Theria <mammals>
http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta
http://purl.obolibrary.org/obo/NCBITaxon_33208 Metazoa
http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria
http://purl.obolibrary.org/obo/NCBITaxon_33317 Protostomia
http://purl.obolibrary.org/obo/NCBITaxon_33511 Deuterostomia
http://purl.obolibrary.org/obo/NCBITaxon_337687 Muroidea
http://purl.obolibrary.org/obo/NCBITaxon_34346 Schizosaccharomycetales
Expand All @@ -493,7 +500,13 @@ http://purl.obolibrary.org/obo/NCBITaxon_4894 Schizosaccharomycetaceae
http://purl.obolibrary.org/obo/NCBITaxon_4895 Schizosaccharomyces
http://purl.obolibrary.org/obo/NCBITaxon_4896 Schizosaccharomyces pombe
http://purl.obolibrary.org/obo/NCBITaxon_554915 Amoebozoa
http://purl.obolibrary.org/obo/NCBITaxon_55879 Rhabditoidea
http://purl.obolibrary.org/obo/NCBITaxon_55885 Peloderinae
http://purl.obolibrary.org/obo/NCBITaxon_6072 Eumetazoa
http://purl.obolibrary.org/obo/NCBITaxon_6231 Nematoda
http://purl.obolibrary.org/obo/NCBITaxon_6236 Rhabditida
http://purl.obolibrary.org/obo/NCBITaxon_6237 Caenorhabditis
http://purl.obolibrary.org/obo/NCBITaxon_6243 Rhabditidae
http://purl.obolibrary.org/obo/NCBITaxon_7711 Chordata
http://purl.obolibrary.org/obo/NCBITaxon_7742 Vertebrata <vertebrates>
http://purl.obolibrary.org/obo/NCBITaxon_7776 Gnathostomata <vertebrates>
Expand Down Expand Up @@ -527,6 +540,7 @@ http://purl.obolibrary.org/obo/PATO_0001402 multipotent
http://purl.obolibrary.org/obo/PATO_0001404 nucleate quality
http://purl.obolibrary.org/obo/PATO_0001548 quality of a liquid
http://purl.obolibrary.org/obo/PATO_0001579 contractility
http://purl.obolibrary.org/obo/PATO_0001591 curvature
http://purl.obolibrary.org/obo/PATO_0001690 contractile
http://purl.obolibrary.org/obo/PATO_0001857 concave
http://purl.obolibrary.org/obo/PATO_0001873 cylindrical
Expand All @@ -545,6 +559,7 @@ http://purl.obolibrary.org/obo/PATO_0002094 basophilic
http://purl.obolibrary.org/obo/PATO_0002124 laminar
http://purl.obolibrary.org/obo/PATO_0002198 quality of a substance
http://purl.obolibrary.org/obo/PATO_0002226 subcylindrical
http://purl.obolibrary.org/obo/PATO_0002254 flattened
http://purl.obolibrary.org/obo/PATO_0002266 3-D shape
http://purl.obolibrary.org/obo/PATO_0002299 tubular
http://purl.obolibrary.org/obo/PATO_0002309 fiber shaped
Expand Down
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